DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mi-2 and chd3

DIOPT Version :10

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:XP_002940874.3 Gene:chd3 / 100216299 XenbaseID:XB-GENE-1008908 Length:2036 Species:Xenopus tropicalis


Alignment Length:2114 Identity:1119/2114 - (52%)
Similarity:1384/2114 - (65%) Gaps:255/2114 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASE-----EENDDNFQEEEEAQEDNAPAAELS-----------------NDSDAPLKPNQNDED 43
            ||.|     ||::|..:||||::|...|:...|                 .||..|:....:.:|
 Frog    17 MAEEGDGEKEEDEDEEEEEEESREQATPSRHCSPSLYFPPTASREPGSVETDSTPPVPAAADQDD 81

  Fly    44 DDYDPEDS-----RRKKKGKKRKTRKGEE--KGRKKKKRKKNESEED-------SDFVQHDEEVE 94
            |:..|..|     .:||:|.|:|.:...:  |..|.:||||.:|:||       .|....|.:.|
 Frog    82 DNLSPVPSPQQPITKKKRGPKKKVKDKVKIPKAVKPRKRKKPDSDEDLRWDEGFGDQASQDSDSE 146

  Fly    95 Y--PSTSKRGRKRKEEKQAAKEKESASSGMPSVEDVCSA-----FSVCNVEIEYSEEELQSLTTY 152
            .  ....|:.:::||:|...::||........||...||     :.:.:|:..:::|:..:||.|
 Frog   147 LGGKKRKKKHKEKKEKKTKKRKKEEVVVVQRKVEQKSSAVLLASWGLEDVDYVFTDEDYHTLTNY 211

  Fly   153 KAFMHHVRPILQKENPKIAAPKLVMLVAAKWREFCESNPHIQQEGGAAGSGGSAGQARSVTGDEP 217
            |||...:||::.|:||||...|::.::.||||||..:||.  :...||.:..:|..|.:|.  |.
 Frog   212 KAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPF--KSSPAAVAAVAAAAAAAVA--EQ 272

  Fly   218 EEPRSSRSSRNEKPDDIYEEAVEEEEEEEEEEKKPRRKRSGRGKKGRRP----SGKVPTLKIKLL 278
            ..|.:..::....|      |:.....:.:|.|.|..|:..:..:...|    ..|:..|||:|.
 Frog   273 VTPVALPTTATVTP------ALPMRRAKTKEGKGPGHKKPYKSPRVAEPKKVGKKKMAPLKIRLA 331

  Fly   279 G-KRKRDSSDEEQDASGASERDSDLEFERMLQKSDDSADEKEAPVSSKADNSAPAAQDDGSGAPV 342
            | |||..||.||.|...||:.::                      ||...:|||:   |.||   
 Frog   332 GMKRKAGSSSEEIDVGEASDLEN----------------------SSVHSSSAPS---DSSG--- 368

  Fly   343 VRKKAKTKIGNKFKKKNKLKKTKNFPEGEDGEHEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEP 407
               :.|.|.|...:||.|:...:....||..|.:|||||||||||||||||||||||||||||||
 Frog   369 ---RVKRKRGRPARKKKKVAVEEGVSAGEGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLEP 430

  Fly   408 ELDEPPEGKWSCPHCEADGGAAE----------------EEDDDEHQEFCRVCKDGGELLCCDSC 456
            ||:..|:|||||||||.:|...|                .|::|:|.||||||||||||||||:|
 Frog   431 ELERAPQGKWSCPHCEKEGVQWEAKELEEEEMEEPKRERREEEDDHMEFCRVCKDGGELLCCDAC 495

  Fly   457 PSAYHTFCLNPPLDTIPDGDWRCPRCSCPPLTGKAEKIITWRWA------------QRSNDDGPS 509
            .|:||..||||||..||.|:|.||||:||.|.||.:||:.|||.            ..:.|:.|.
 Frog   496 VSSYHIHCLNPPLPDIPHGEWLCPRCTCPQLKGKVQKILHWRWGVPPEGVPLPQPLDGAQDEEPP 560

  Fly   510 TSKGSKNSNSRVREYFIKWHNMSYWHCEWVPEVQLDVHHPLMIRSFQRKYDMEEPPKFEESLDEA 574
            .:...::.    ||:|:||..||||||.|:.|:||::.|.:|.|:||||.||:|||.|:....| 
 Frog   561 RALQGRSE----REFFVKWAGMSYWHCCWITELQLEIFHTVMYRNFQRKNDMDEPPPFDYGSGE- 620

  Fly   575 DTRYKRIQRHKDKVGMKANDDAEV--LEERFYKNGVKPEWLIVQRVINHRTARDGSTMYLVKWRE 637
                       |:...:.:.|||.  ||||||:.|:||||:.:||:|||...:.|:..||||||:
 Frog   621 -----------DEGKSEKSKDAEYSDLEERFYRYGIKPEWMSIQRIINHSLDKRGNYHYLVKWRD 674

  Fly   638 LPYDKSTWEEEGDDIQGLRQAIDYYQDLRAVCTSETTQSRSKKSKKGRKSKLKVEDDEDRPVKHY 702
            |.||:|||||:...:.........|...|.:...::.....|..::.::|.|           |.
 Frog   675 LSYDQSTWEEDAMKLPDYEYHKPLYWRHRQLMMGDSACCPQKYKRQHKESYL-----------HG 728

  Fly   703 TPPPEKPTTDLKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTV 767
            .  |..|..|...||:.||.|:..||..||.||:||:||||:||.||.||||||||||||||||:
 Frog   729 V--PSSPINDPTVKYDTQPQFVSSTGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTI 791

  Fly   768 TFLYSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGA 832
            .||||||||||.:|||||:.||||::||||||::||||||.:||.||||||:||||||.|:::..
 Frog   792 VFLYSLYKEGHTQGPFLVSAPLSTIINWEREFQMWAPDFYVVTYTGDKDSRSVIRENEFSYQDNV 856

  Fly   833 IRGSKVS-RLRT-TQYKFNVLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSY 895
            ::|.|.: :::. .|.||:||||||||:::|.|.||||.||.||||||||||:|||||||:||.|
 Frog   857 MKGGKKAFKMKAQAQVKFHVLLTSYELVTIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGY 921

  Fly   896 TIAYKLLLTGTPLQNNLEELFHLLNFLSRDKFNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRR 960
            .|.||||||||||||||||||||||||:.::||:|..|..||||:|||:|:|:||::||||:|||
 Frog   922 QIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLDGFLEEFADISKEDQIKKLHDLLGPHLLRR 986

  Fly   961 LKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHP 1025
            :|.||.||||:|:|.|||||||.||||:||||||:|:|||||:.||...||:|||||||||||||
 Frog   987 MKADVFKNMPAKTELIVRVELSPMQKKYYKFILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHP 1051

  Fly  1026 YLFPSAAEEATTAAGGLYEINSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLE 1090
            ||||:|:.|:.....|.||..||.||:|||:||.|||::|..|.||||||||||||||||||||:
 Frog  1052 YLFPAASLESPKLPSGAYEGGSLVKASGKLLLLHKMLRKLNEQGHRVLIFSQMTKMLDILEDFLD 1116

  Fly  1091 GEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1155
            .|.||||||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||||
 Frog  1117 FEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1181

  Fly  1156 DIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQELDD 1220
            |||||||||||||||||||||||||.|||||:||||||||||||||||||:|.|..:.:||||||
 Frog  1182 DIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDD 1246

  Fly  1221 ILRFGTEDLFKE-----DDKEE---AIHYDDKAVAELLDRTNRGIEEKE-SWANEYLSSFKVASY 1276
            ||:||||:|||:     |:||:   .||||:.|:..||||.....|:.| ...||||||||||.|
 Frog  1247 ILKFGTEELFKDEIEAGDNKEDDSSVIHYDNGAIDRLLDRNQDVTEDTEVQNMNEYLSSFKVAQY 1311

  Fly  1277 ATKEEE--EEEETEIIKQDAENSDPAYWVKLLRHHYEQHQEDVGRSLGKGKRVRKQVNYTDGGVV 1339
            ..:|||  ||.|.|:|||: ||.||.||.|||||||||.|||:.|:|||||||||||||.     
 Frog  1312 VVREEEKLEELEREVIKQE-ENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYN----- 1370

  Fly  1340 AADTTRDDSNWQDNGSEYNSEYSAGSDEDGGDDDFDDQNGAERKAKRRLERRDDRPLPPLLARVG 1404
              |..::|   |||    .||||.||:|:  |:|||::....|:::|:|....|:||||||||||
 Frog  1371 --DAAQED---QDN----QSEYSVGSEEE--DEDFDERAEGRRQSRRQLRNEKDKPLPPLLARVG 1424

  Fly  1405 GNIEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFMRHLCEPGAD 1469
            |||||||||.||||:||||:||:||||||||::.|||||||||||:.||||||||||||||||||
 Frog  1425 GNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFSTHWLVRDLRGKSEKEFKAYVSLFMRHLCEPGAD 1489

  Fly  1470 NAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELILKPCEPVRSALKQDVA 1534
            .:|||||||||||||||.||||||||||::||:||||||||.:|||||:..|      :|...::
 Frog  1490 GSETFADGVPREGLSRQQVLTRIGVMSLVKKKIQEFEHINGRWSMPELMPDP------SLDSKLS 1548

  Fly  1535 ALEAPPTGGNVDKSATT---SNSVTPATSAAPSPAPASEKGE---------DKDKDSEKEKDKTS 1587
            :..:.||   |..|.||   |.:.||.||...:||| ||:||         :.:...|||.|...
 Frog  1549 SRASSPT---VKTSTTTPEPSLTNTPCTSKPATPAP-SERGENGGTPVDTGEAECKEEKENDLKG 1609

  Fly  1588 AEKSEVKQEQEAE---EDKKPGDVKQENPVEEAAGD---TKPSDAEVKTEVAKTEPKEETKDPEV 1646
            .||.::..||.|.   .:..|......|||..:..:   .|||           ||.:.|..   
 Frog  1610 TEKRDIVPEQTATARVSNITPSPKDTVNPVCNSGSERSREKPS-----------EPPDLTPG--- 1660

  Fly  1647 KEEPKTEE-KEKEKVDDKKPIPPTTVIDDDDDDVM-IVKEDGELE--------------KPSASS 1695
            :||||.|. ...|.|.||    |:.|..:.:..:. :.:.||.|:              ||...:
 Frog  1661 REEPKAESAAAAETVGDK----PSAVAPEPEKPLEGVTERDGALQRQEGVGEPQRAEEVKPEREA 1721

  Fly  1696 PKDQKAVAAATSAATGATGKGAEDSLEVLKRKFMFNIADGGFTELHTLWLNEEKAAV-PGREYEI 1759
            .||.| :.........:.|:..|:..|  :.:|||||||||||||||||.|||:||: .||..:|
 Frog  1722 VKDTK-MNIQKEEVKSSNGRKEENRPE--RPRFMFNIADGGFTELHTLWQNEERAAICSGRLNDI 1783

  Fly  1760 WHRRHDYWLLAGIVTHGYGRWQDIQNDIRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQAL 1824
            ||||||||||||||.|||.||||||||..|||||||||.:..||||||:||||||||||||||||
 Frog  1784 WHRRHDYWLLAGIVVHGYARWQDIQNDSPFAIINEPFKSEANKGNFLEMKNKFLARRFKLLEQAL 1848

  Fly  1825 VIEEQLRRAAYLNLAQDPSHPAMSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLE 1889
            |||||||||||||:.||||||||:|||||:|||||||||||||||||||||||||||||||||||
 Frog  1849 VIEEQLRRAAYLNMTQDPSHPAMALNARFSEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLE 1913

  Fly  1890 ELLSDMKSDVSRLPATLARIPPVAQRLQMSERSILSRLAATAGNASNAAQLMAQFPAG------F 1948
            |||||||:||:||||:||||||:|.||||||||||||| |:.|:.|.|..:   ||.|      .
 Frog  1914 ELLSDMKADVTRLPASLARIPPIAARLQMSERSILSRL-ASKGSESTAPPV---FPPGPYTTPPM 1974

  Fly  1949 QGTTLPAFTSGPAGNFANFRPQFSVPGQLSNNSG 1982
            .|.|.|:.....|....|:. |..:...||.::|
 Frog  1975 FGATFPSNPQSAALTGTNYN-QMPLGSFLSASNG 2007

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..191 CDD:462357 21/52 (40%)
TNG2 <282..422 CDD:227367 65/139 (47%)
PHD1_CHD_II 380..422 CDD:277006 37/41 (90%)
PHD2_CHD_II 440..482 CDD:277007 31/41 (76%)
CD1_tandem_CHD3-4_like 487..557 CDD:349314 29/81 (36%)
CD2_tandem_CHD3-4_like 610..664 CDD:349309 24/53 (45%)
PLN03142 720..>1234 CDD:215601 387/520 (74%)
DUF1087 <1292..1334 CDD:461922 32/41 (78%)
CHDII_SANT-like 1380..1517 CDD:461920 108/136 (79%)
CHDCT2 1757..1902 CDD:462358 127/144 (88%)
chd3XP_002940874.3 CHDNT 195..250 CDD:462357 22/54 (41%)
PHD1_CHD_II 403..445 CDD:277006 37/41 (90%)
PHD2_CHD_II 479..521 CDD:277007 31/41 (76%)
CD1_tandem_CHD3-4_like 526..604 CDD:349314 29/81 (36%)
CD2_tandem_CHD3-4_like 647..701 CDD:349309 24/53 (45%)
PLN03142 738..>1293 CDD:215601 401/554 (72%)
DEXHc_CHD3 755..986 CDD:350813 162/230 (70%)
DUF1087 1327..1377 CDD:461922 37/60 (62%)
CHDII_SANT-like 1398..1537 CDD:461920 108/138 (78%)
PspC_subgroup_2 <1535..1750 CDD:468202 64/245 (26%)
CHDCT2 1781..1926 CDD:462358 127/144 (88%)

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