DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp32 and usp4

DIOPT Version :9

Sequence 1:NP_001262074.2 Gene:Usp32 / 40169 FlyBaseID:FBgn0036913 Length:1779 Species:Drosophila melanogaster
Sequence 2:XP_002662556.2 Gene:usp4 / 449927 ZFINID:ZDB-GENE-041008-187 Length:1009 Species:Danio rerio


Alignment Length:1443 Identity:323/1443 - (22%)
Similarity:488/1443 - (33%) Gaps:603/1443 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   400 RVGQFWYLITHDWWLSWMQYTQHTTHTCDYCKRTASQRTAVDEALVCDESFNTHSLEQHDSYSLG 464
            |.|..||||...|:..|.:|                         |..:|::.:::.:|:.|   
Zfish    45 RKGDEWYLIDSRWFKQWKKY-------------------------VGFDSWDLYNVGEHNLY--- 81

  Fly   465 SGTGSASGSGSASSGISAGRHCGPVRPGPIDNSNLITANPFRNVRTLTGEGGHLKRDTPLVQNHD 529
                                      |||||||.|.:....::::.      |      |:...|
Zfish    82 --------------------------PGPIDNSGLFSDRKSQSLKE------H------LIDELD 108

  Fly   530 FELVPKSLWKALNRWY---GDNLPLPRQVIQ----PPNSDVELELYPLNLRILLHQAQPSQTGVG 587
            :.|||...|..|..||   |:..|:.|:|::    ..:..||:.|..|||               
Zfish   109 YVLVPTEAWNKLVSWYGSLGNQKPIIRKVVEHGMFVKHCKVEVYLLELNL--------------- 158

  Fly   588 GGTQLGSWGSTVSGGYGVLASGGGYAAIAVSSVLQPPKRYLAYTAAFSRLATVRQVGEFLCEQLR 652
                                             .:........|..||:..|:..:.:.:.....
Zfish   159 ---------------------------------CENDNMDKVVTRHFSKADTIDTIEKEMRSLFD 190

  Fly   653 LKSE-DIRLWHVPQLDNGAILLEEDAMCLKELLIRDNDQLLLEIRNKDLTWPEE----LGSLATA 712
            :.|| :.|||: ..:.|....|.:....:::..:.....|::|.:|:|.|||.:    ..|.:|:
Zfish   191 IPSEKETRLWN-KYMSNTYEQLNKLDSTVQDAGLFQGQVLVIEKKNEDGTWPRQSCHSKSSTSTS 254

  Fly   713 QCGQGAGTPGDRRRLTRSSIM------------------------------------SVHAPGAT 741
            :....:..|......|.||.:                                    |...||..
Zfish   255 RNYTTSPKPSSNSSATISSTITNGDSNSNSGYMLNNSTSGNRLGSYNSYSSSYSYRESAAQPGLC 319

  Fly   742 GLHNLGNTCFMNAALQVLFNTQPLAQYFQREMHRFEVNAANKLGTKGQLAMRYAELLKEVWTATT 806
            ||.|||||||||:|||.|.||.||.:||..:.:..|:|..|.||.:|::|..||:|:|::|.:.:
Zfish   320 GLSNLGNTCFMNSALQCLSNTPPLTEYFLEDRYEAEINRENPLGMRGEIAEAYADLVKQMWLSRS 384

  Fly   807 RSVAPLKLRFCVNKYAPQFAGGGQHDSQELLEWLLDALHEDLNRVMEKPYSELKDSNGRPDKIVA 871
            ..|||...:..|.::||||:|..|.||||||.:|||.||||||||.:|||..|:|:.||||:|||
Zfish   385 SYVAPRTFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLALRDAEGRPDEIVA 449

  Fly   872 AEAWSQHHARNQSIIIDLFYGQLKSKVSCLGCGHESVRFDPFSLLSLPLPVENYIYFEVLVILLD 936
            .|||:.|..||.|||:|:|:|..||.:.|..|...||.||||..|:||||::.....||.::..|
Zfish   450 KEAWANHRLRNDSIIVDIFHGLFKSTLVCPECSKVSVTFDPFCYLTLPLPMKKDRTMEVYLVRTD 514

  Fly   937 GS---------VPIKYGFRLNSDCKYSHLKHKLSTMCSLPPNLMLVCELWNSQIRQVLNDDEKLR 992
            ..         || |.|       ..:.|...|:.:..:|...|:|.:::|.:..::...|:.|.
Zfish   515 PQFRAMQFRVVVP-KMG-------AVADLCSALAKLSGVPSENMVVADVYNHRFHKIYKRDDGLN 571

  Fly   993 TQSAK-ELYVYQ-LPEQSMR--------------TRSNSGLSMH--------------------- 1020
            ....| :::||: |.|.|.|              :..:||..:.                     
Zfish   572 QIMEKDDIFVYEVLEEDSERMNLPVYFRERHAKHSGGSSGTMLFGQPLLITVPRLNLTVDTLYER 636

  Fly  1021 -IEQGLKDIQRSSALITSAQDSLSSLSTLQTSSHRASSRVLCNGHVSGLDVEGEAEVGTDVSQCN 1084
             :|:..:.::||...||.::.|.|:.|:..:.|....:.|  :.|.:||  .|.:...:|.:.|:
Zfish   637 VLERIGRYVKRSQGTITESRASASATSSSSSQSPECLASV--SSHGTGL--SGCSSPVSDGASCS 697

  Fly  1085 SNSNYNPIVSTYSGNGSGDNQVHELLPDEAGKVSRCFGKRECMPHSLFCFKESLILSSSPENTFM 1149
            :.||    .|.:||..:|.|.|             |.|..|.|.|.         .|..|||:  
Zfish   698 AGSN----GSNHSGTCNGPNGV-------------CDGDEEAMDHQ---------ESPEPENS-- 734

  Fly  1150 HGAAAQQKRVSSAKLLHTESNTSSMSYTNHSGENSMESSLTEPIPLADLEPVSSRNGSGGEDCSY 1214
                            |:::         ..||.             |.||.:..|.|||:.   
Zfish   735 ----------------HSDT---------VDGEE-------------DSEPENGPNSSGGKS--- 758

  Fly  1215 RTSPNDSSGLSTGHTLGASLDVDEQAEEGNAEDHDQPDQITTSQPETSSGVYSRRSSQPPHKAGK 1279
                                                                             
Zfish   759 ----------------------------------------------------------------- 758

  Fly  1280 YLVAVHRKITRHDSYFLSYHKTRPSLFGVPLLIPNSEGGTHKDLYCAVWLQVSRLLSPLPATTEQ 1344
                               ..:||.||...::  ||.|..:              :|.||     
Zfish   759 -------------------FNSRPKLFSFSMV--NSYGTAN--------------ISSLP----- 783

  Fly  1345 ANHAADCDDSLGYDFPFTLRAVKADGLTCAICPWSSFCRGCEIRCNNDYVLQGALPPINAAASNT 1409
                                   .||                                       
Zfish   784 -----------------------FDG--------------------------------------- 786

  Fly  1410 STPKMNAKFPSLPNLEAKRTPEYTASLSYTPTTKYFEDFTIAIDWDPTALHLRYQSTLERLWVDH 1474
                         ||                 .|.....|:|||||.....|.|.......:..|
Zfish   787 -------------NL-----------------LKLTTHSTVAIDWDSDTKRLCYDDQEAEAYDKH 821

  Fly  1475 ETIAISRREQVEPVDLNHCLRAFTSEEKL---EQWYHCSHCKGKKPATKKLQIWKLPPILIVHLK 1536
            |::..:::::. .|.|..|:..||:.|.|   :.|| |..||..:.||||..:|.||.||:||||
Zfish   822 ESMLHAQKKKT-TVALRECIELFTTMETLGEHDPWY-CPTCKKHQQATKKFDLWSLPRILVVHLK 884

  Fly  1537 RFNCVNGKW-VKSQKVVHFPFDDFDPTPYLASVPQETILRHKELLELKNDAEMTMATNEVVSELD 1600
            ||: .|..| .|...||.||..|.:.:.::..                                 
Zfish   885 RFS-YNRCWRDKLDTVVDFPIRDLNMSEFVCD--------------------------------- 915

  Fly  1601 EIDAPSKEVKEELPNQTGSTKATASPPPTGNILRQSKTKNAVRRQRLISTSLTKTPIVDGEFEDY 1665
                                                                             
Zfish   916 ----------------------------------------------------------------- 915

  Fly  1666 HQHRLKPDVDQFDPRYRLYAVVSHSGMLNGGHYISYASN-ATGSWYCYNDSSCREISQKPVIDPS 1729
                  |..|.:  .|.|.||.:|.|.:.||||.:|..| |.|.||.::|||....::..:: ..
Zfish   916 ------PKADPY--IYDLIAVSNHYGGMGGGHYTAYGKNKADGKWYYFDDSSVSAATEDQIV-TK 971

  Fly  1730 AAYLLFYERKGLD 1742
            |||:|||:|:..|
Zfish   972 AAYVLFYQRRDAD 984

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp32NP_001262074.2 FRQ1 186..317 CDD:227455
UBP12 486..>1002 CDD:227847 170/573 (30%)
Peptidase_C19 <1480..1737 CDD:351799 61/261 (23%)
usp4XP_002662556.2 UBP12 8..981 CDD:227847 321/1438 (22%)
DUSP 44..141 CDD:197831 35/161 (22%)
Ubiquitin_3 155..242 CDD:291502 20/135 (15%)
Peptidase_C19 319..>507 CDD:271592 99/187 (53%)
USP7_C2 526..>606 CDD:291217 19/87 (22%)
Peptidase_C19R <834..979 CDD:239139 61/253 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1283205at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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