DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp32 and Usp31

DIOPT Version :9

Sequence 1:NP_001262074.2 Gene:Usp32 / 40169 FlyBaseID:FBgn0036913 Length:1779 Species:Drosophila melanogaster
Sequence 2:XP_038934149.1 Gene:Usp31 / 308959 RGDID:1308183 Length:1349 Species:Rattus norvegicus


Alignment Length:1211 Identity:234/1211 - (19%)
Similarity:367/1211 - (30%) Gaps:512/1211 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   581 PSQTGVGGGTQLGSWGSTV--SGGYGVLASGGGYAAIAVSSVLQPPKRYLAYTAAFSRLATVRQV 643
            |......||.:..|:...:  ||..|.....||....|.||.                 ::.|.|
  Rat    11 PGPPVAAGGKEKRSFSKRLFRSGRAGGSGGAGGPGPAAPSSP-----------------SSARSV 58

  Fly   644 GEFLCEQLRLKSEDIRLWHVPQ----LDNGAILLEEDAMCLKELLIRDNDQLLLEIRNKDLTWPE 704
            |.|:...|:..|   .|.|:..    .|.|.:     ..|..                     |.
  Rat    59 GSFMSRVLKTLS---TLSHLSSEGAAPDRGGL-----RSCFP---------------------PG 94

  Fly   705 ELGSLATAQCGQGAGTPGDRRRLTRSSIMSVHAPGATGLHNLGNTCFMNAALQVLFNTQPLAQYF 769
            ...:.....|.....:|..      .:..|...||..||.|.||||||||.||.|.||:..|:|.
  Rat    95 PASAPTPPPCPPPPASPAP------PACASEPVPGVAGLRNHGNTCFMNATLQCLSNTELFAEYL 153

  Fly   770 QREMHRF---------EVNAANKLGTKGQLAMRYAELLKEVWTATTRSVAPLKLRFCVNKYAPQF 825
            ....:|.         |..|......:|::..:.|.|::.:||...........:..|:|.|.|:
  Rat   154 ALGQYRAGRPEPEPEPEQPAGRGPHGQGEVTEQLAHLVRALWTLEYTPQHSRDFKSIVSKNALQY 218

  Fly   826 AGGGQHDSQELLEWLLDALHEDLNRVME-------KPYSELKDSNGRPDKIVAAEAWSQHHARNQ 883
            .|..|||:||.|.||||.:|||||..::       ||.||.......|...|.:           
  Rat   219 RGNSQHDAQEFLLWLLDRVHEDLNHAVKQSGQPPLKPPSETDMMPEGPSFPVCS----------- 272

  Fly   884 SIIIDLFYGQLKSKVSCLGCGHESVRFDPFSLLSLPLPVENY--IYFEV-------------LVI 933
            :.:.:||..|.:|.::|..|..:|..||||..:|||:|:.:.  :|..|             :.:
  Rat   273 TFVQELFQAQYRSSLTCPHCQKQSNTFDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAV 337

  Fly   934 LLDGSVPIKYGFRLNSDCKYSHLKHKLSTMCSLPPNLMLVCELWNSQIRQVLNDDEKLRTQSAKE 998
            .|.|:|              :.|:..:|....:|.:.:::.|::.....:..:|.:.|.|....:
  Rat   338 PLSGTV--------------ARLREAVSMETKIPTDQIVLTEMYYDGFHRSFSDTDDLETVHESD 388

  Fly   999 -LYVYQLPE-------QSMR-TRSNSGLSMHIEQGLKDIQRSSALITSAQDSLSSLSTLQTSSHR 1054
             ::.::.||       .|.| ...|:.|: |::.||...:.||:..|:|:.....|     .|..
  Rat   389 CIFAFETPEIFRPEGILSQRGIHLNNNLN-HLKFGLDHHRLSSSTPTAAKQGRVDL-----PSRV 447

  Fly  1055 ASSRVLCNGHVSGLDVEGEAEVGTDVSQCNSNSNYNPIVSTYSGNGSGDNQVHELLPDEAGKVSR 1119
            ||.:::                   :..||                                   
  Rat   448 ASDKIV-------------------LLVCN----------------------------------- 458

  Fly  1120 CFGKRECMPHSLFCFKESLILSSSPENTFMHGAAAQQKRVSSAKLLHTESNTSSMSYTNHSGENS 1184
                |.|                         ...|.||.....:||.|...:            
  Rat   459 ----RAC-------------------------TGQQGKRFGLPFVLHLEKTVA------------ 482

  Fly  1185 MESSLTEPIPLADLEPVSSRNGSGGEDCSYRTSPNDSSGLSTGHTLGASLDVDEQAEEGNAEDHD 1249
                       .||                                                   
  Rat   483 -----------WDL--------------------------------------------------- 485

  Fly  1250 QPDQITTSQPETSSGVYSRRSSQPPHKAGKYLVAVHRKITRHDSYFLSYHKTRPSLFGVPLLIPN 1314
                                              :.::|.....|||     ||:          
  Rat   486 ----------------------------------LQKEILEKMKYFL-----RPT---------- 501

  Fly  1315 SEGGTHKDLYCAVWLQVSRLLSPLPATTEQANHAADCDDSLGYDFPFTLRAVKADGLTCAICPWS 1379
                        |.:||                   |        ||:||.|...|:|       
  Rat   502 ------------VSVQV-------------------C--------PFSLRVVSVVGIT------- 520

  Fly  1380 SFCRGCEIRCNNDYVLQGALPPINAAASNTSTPKMNAKFPSLPNLEAKRTPEYTASLSYTPTTKY 1444
                         |:|.....|:              ..|::........|..||.:.       
  Rat   521 -------------YLLPQEEQPL--------------CHPTVERALKSCGPGGTAHVK------- 551

  Fly  1445 FEDFTIAIDWDPTALHLRYQSTLERLWVDHETIAISRREQVEP--VDLNHCLRAFTSEEKL---E 1504
                 :.::||.......:.:|.:....|.|::.:.:.:..:|  ..|:.|.:.:|.||:|   :
  Rat   552 -----LVVEWDKETKDFLFVNTEDEYIPDAESVRLQKEQHHQPQTCTLSQCFQLYTKEERLAPDD 611

  Fly  1505 QWYHCSHCKGKKPATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPTPYLASVP 1569
            .| .|.|||..:..:..|.:|.||.:||:|||||.....:.:|.|.:|.||....|.||::....
  Rat   612 AW-RCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGDRRMKLQNMVKFPLTGLDMTPHVVKRS 675

  Fly  1570 QETILRHKELLELKNDAEMTMATNEVVSELDEIDAPSKEVKEELPNQTGSTKATASPPPTGNILR 1634
            |.:                                      ..||:.....:.     |.|    
  Rat   676 QSS--------------------------------------WSLPSHWSPWRR-----PYG---- 693

  Fly  1635 QSKTKNAVRRQRLISTSLTKTPIVDGEFEDYHQHRLKPDVDQFDPRYRLYAVVSHSGMLNGGHYI 1699
                             |.:.|      |||              .|.||||.:|.|.:.||||.
  Rat   694 -----------------LGRDP------EDY--------------IYDLYAVCNHHGTMQGGHYT 721

  Fly  1700 SYASNAT-GSWYCYNDSSCREISQKPVIDPSAAYLLFYERK 1739
            :|..|:. |.|||::||..:::|:..|. ...||:|||:|:
  Rat   722 AYCKNSVDGLWYCFDDSDVQQLSEDEVC-TQTAYILFYQRR 761

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp32NP_001262074.2 FRQ1 186..317 CDD:227455
UBP12 486..>1002 CDD:227847 108/458 (24%)
Peptidase_C19 <1480..1737 CDD:351799 66/262 (25%)
Usp31XP_038934149.1 UBP12 <123..762 CDD:227847 206/1047 (20%)
PHA03307 959..>1211 CDD:223039
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1283205at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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