DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp32 and Usp43

DIOPT Version :9

Sequence 1:NP_001262074.2 Gene:Usp32 / 40169 FlyBaseID:FBgn0036913 Length:1779 Species:Drosophila melanogaster
Sequence 2:XP_038940907.1 Gene:Usp43 / 100147704 RGDID:2303824 Length:1136 Species:Rattus norvegicus


Alignment Length:1080 Identity:218/1080 - (20%)
Similarity:327/1080 - (30%) Gaps:488/1080 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly   714 CGQG-----AGTPGDRRRL-TRSSIMS---VHAPGATGLHNLGNTCFMNAALQVLFNTQPLAQYF 769
            |..|     :|:||..|.| ::..|.|   ...|||.||.|.||||||||.:|.|.||..||::.
  Rat    65 CAPGPAPASSGSPGPDRPLGSQPQISSGDGARPPGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFL 129

  Fly   770 QREMHRFEVNAANKLGTKGQLAMRYAELLKEVWTATTRSVAPLKLRFCVNKYAPQFAGGGQHDSQ 834
            ....:|       .:..:.::..:.|.|::.:||.........:.:..|:||..||.|..|||:.
  Rat   130 ALGRYR-------AVPGRAEVTEQLAALVRALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDAL 187

  Fly   835 ELLEWLLDALHEDL----------------NRVMEKPYSELKDSNGRPDKIVAAEAWSQHHARNQ 883
            |.|.||||.:||||                :::.|    :|:.|...|.   ...::.|.|    
  Rat   188 EFLLWLLDRVHEDLEGSTHGQGSEQLPPEASKISE----DLRSSAAPPS---LGPSFVQSH---- 241

  Fly   884 SIIIDLFYGQLKSKVSCLGCGHESVRFDPFSLLSLPLPVENYIYFEVLVILLDGS---------V 939
                  |..|.:|.::|..|..:|..||||..:|||:|:....:..|.::....|         |
  Rat   242 ------FQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAV 300

  Fly   940 PIKYGFRLNSDCKYSHLKHKLSTMCSL----------PPNLMLVCELWNSQIRQVLNDDEKLRT- 993
            ||                  |||:.:|          |...:::.||:.:..::...|:|.|.| 
  Rat   301 PI------------------LSTVAALRKMVAEEGGVPAEEVILVELYPNGFQRSFFDEEDLNTI 347

  Fly   994 QSAKELYVYQ---LPEQSMRTRSNSGLSMHIEQGLKDIQRSSALITSAQDSLSSLSTLQTSSHRA 1055
            .....:|.:|   ||..........|||:.....::|.||.|..:.|                  
  Rat   348 AEGDNVYAFQVPPLPGPGTLAAHPPGLSVSPRLAVRDSQRFSVPLHS------------------ 394

  Fly  1056 SSRVLCNGHVSGLDVEGEAEVGTDVSQCNSNSNYNPIVSTYSGNGSGDNQVHELLPDEAGKVSRC 1120
            .:|||                   :..||       :|      |||.            :.|| 
  Rat   395 ENRVL-------------------ILFCN-------LV------GSGQ------------QASR- 414

  Fly  1121 FGKRECMPHSLFCFKESLILSSSPENTFMHGAAAQQKRVSSAK-LLHTESNTSSMSYTNHSGENS 1184
            ||..       |..:|...:|         .|..||..:|..: |:..|.:...:        .:
  Rat   415 FGPP-------FLIREDRTIS---------WAQLQQCILSKVRCLMRNEVSAQDL--------GT 455

  Fly  1185 MESSLTEPIPLADLEPVSSRNGSGGEDCSYRTSPNDSSGLSTGHTLGASLDVDEQAEEGNAEDHD 1249
            :.|.....:.||               ||| .||.||..|.                      |.
  Rat   456 LFSIRVVGLSLA---------------CSY-LSPQDSRPLC----------------------HW 482

  Fly  1250 QPDQITTSQPETSSGVYSRRSSQPPHKAGKYLVAVHRKITRHDSYFLSYHKTRPSLFGVPLLIPN 1314
            ..|:          .::.||...|||                                       
  Rat   483 AVDR----------ALHLRRPGGPPH--------------------------------------- 498

  Fly  1315 SEGGTHKDLYCAVWLQVSRLLSPLPATTEQANHAADCDDSLGYDFPFTLRAVKADGLTCAICPWS 1379
                                                               ||            
  Rat   499 ---------------------------------------------------VK------------ 500

  Fly  1380 SFCRGCEIRCNNDYVLQGALPPINAAASNTSTPKMNAKFPSLPNLEAKRTPEYTASLSYTPTTKY 1444
                                                                             
  Rat   501 ----------------------------------------------------------------- 500

  Fly  1445 FEDFTIAIDWDPTALHLRYQSTLERLWVDHETIAISRREQVEP-VDLNHCLRAFTSEEKLEQ--- 1505
                 :|::||.:.....:.|..|....|.:::...::...:| ..|:.|.:::|.||:|.|   
  Rat   501 -----LAVEWDSSVTERLFGSLQEERVQDADSVWRQQQAHQQPSCTLDECFQSYTKEEQLAQDDA 560

  Fly  1506 WYHCSHCKGKKPATKKLQIWKLPPILIVHLKRFNCVNGKWVKSQKVVHFPFDDFDPTPYLASVPQ 1570
            | .|.||:..:....||.:|.||.|||:|||||..|..:..|...:|.||....:..|::|    
  Rat   561 W-KCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHVA---- 620

  Fly  1571 ETILRHKELLELKNDAEMTMATNEVVSELDEIDAPSKEVKEELPNQTGSTKATASPPPTGNILRQ 1635
                                                          ..||.:.|.|.|       
  Rat   621 ----------------------------------------------RRSTNSKAGPGP------- 632

  Fly  1636 SKTKNAVRRQRLISTSLTKTPIVDGEFEDYHQHRLKPDVDQFDPRYRLYAVVSHSGMLNGGHYIS 1700
                          .|..|.||            ..|.....|..|.||||.:|.|.|.||||.:
  Rat   633 --------------WSSWKQPI------------CLPTTYPLDFLYDLYAVCNHHGSLQGGHYTA 671

  Fly  1701 YASNA-TGSWYCYNDSSCREISQKPVIDPSAAYLLFYERK 1739
            |..|: .|.||.|:||:...:.:..| :...||:|||:::
  Rat   672 YCRNSLDGQWYSYDDSTVEPLREDEV-NTRGAYILFYQKR 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp32NP_001262074.2 FRQ1 186..317 CDD:227455
UBP12 486..>1002 CDD:227847 90/332 (27%)
Peptidase_C19 <1480..1737 CDD:351799 68/261 (26%)
Usp43XP_038940907.1 UBP12 <77..711 CDD:227847 215/1068 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1283205at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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