DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab8 and RAB8C

DIOPT Version :10

Sequence 1:NP_524172.1 Gene:Rab8 / 40168 FlyBaseID:FBgn0262518 Length:207 Species:Drosophila melanogaster
Sequence 2:NP_195972.1 Gene:RAB8C / 831817 AraportID:AT5G03520 Length:216 Species:Arabidopsis thaliana


Alignment Length:183 Identity:121/183 - (66%)
Similarity:151/183 - (82%) Gaps:4/183 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 YDYLFKLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDNKKIKLQIWDTAGQER 69
            ||||.||||||||||||:|:|.|||:|.|.|:||:||||||||||:|||.|:|||||||||||||
plant    12 YDYLIKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQER 76

  Fly    70 FRTITTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKMLLGNKCELTD-KRQVSK 133
            |||||||||||||||:||||:|.|.||.||:||::|||::||.:|.|:|:|||.::.: ||.|..
plant    77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDNVNKILVGNKADMDESKRAVPT 141

  Fly   134 ERGEQLAIEYGIKFMETSAKASINVEEAFLTLASDIKAK-TEKRMEANNPPKG 185
            .:|:.||.||||||.|||||.::|||..|:::|.|||.: ||...:|.  |:|
plant   142 AKGQALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQRLTETDTKAE--PQG 192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab8NP_524172.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 115/166 (69%)
RAB8CNP_195972.1 Rab8_Rab10_Rab13_like 13..180 CDD:206659 115/166 (69%)

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