DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab8 and rab40b

DIOPT Version :10

Sequence 1:NP_524172.1 Gene:Rab8 / 40168 FlyBaseID:FBgn0262518 Length:207 Species:Drosophila melanogaster
Sequence 2:NP_001072188.1 Gene:rab40b / 779634 XenbaseID:XB-GENE-490554 Length:278 Species:Xenopus tropicalis


Alignment Length:164 Identity:76/164 - (46%)
Similarity:104/164 - (63%) Gaps:1/164 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KTYDYLFKLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDNKKIKLQIWDTAGQ 67
            |.||:|.|.||:|||.|||..||....:....:.:...:|||:|..||.||.::||||:|||:||
 Frog     9 KAYDFLLKFLLVGDSDVGKGEILASLQDGCTESPYGYNMGIDYKTTTILLDGRRIKLQLWDTSGQ 73

  Fly    68 ERFRTITTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKMLLGNKCELTDKRQVS 132
            .||.||..:|.|||.|::||||||...||:.|..||:.|:|:|.. |.|:|:||:..|..|||||
 Frog    74 GRFCTIFRSYSRGAQGVILVYDITNRWSFDGIDRWIKEIDEHAPG-VPKILVGNRLHLAFKRQVS 137

  Fly   133 KERGEQLAIEYGIKFMETSAKASINVEEAFLTLA 166
            .::.:..|...|:.|.|.|...:.|:.|:|..||
 Frog   138 TDQAQNFAERLGMTFFEVSPLCNFNITESFTELA 171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab8NP_524172.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 74/161 (46%)
rab40bNP_001072188.1 Rab40 9..278 CDD:133321 76/164 (46%)
SOCS_Rab40 187..229 CDD:239711
Blue background indicates that the domain is not in the aligned region.

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