DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab8 and rasef

DIOPT Version :10

Sequence 1:NP_524172.1 Gene:Rab8 / 40168 FlyBaseID:FBgn0262518 Length:207 Species:Drosophila melanogaster
Sequence 2:XP_699335.4 Gene:rasef / 570731 ZFINID:ZDB-GENE-081105-157 Length:706 Species:Danio rerio


Alignment Length:196 Identity:76/196 - (38%)
Similarity:117/196 - (59%) Gaps:13/196 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 FKLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDNKKIKLQIWDTAGQERFRTI 73
            ::::|.||:.|||:..|.|..::.|.....:|:|:||:::|:.:|.....||:||||||||||:|
Zfish   508 YRIVLAGDAAVGKSSFLLRLCKNEFKGNTSATLGVDFQMKTLVVDGVPTVLQLWDTAGQERFRSI 572

  Fly    74 TTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKMLLGNKCELTDKRQ-------- 130
            ..:|:|.|.|::|:||:|.||||.|::.|:..||:.:..|:..||:|||   ||.|:        
Zfish   573 AKSYFRRADGVLLLYDVTCEKSFLNVREWVDIIEDVSQDDIPIMLVGNK---TDLRKEALQDGVT 634

  Fly   131 -VSKERGEQLAIEYGIKFMETSAKASINVEEAFLTLASDIKAKTEKRMEANNPPK-GGHQLKPMD 193
             :....||:||:.|...|.|||||...|:.||.|.||.::....:...|..:..| .|:..|.|.
Zfish   635 CIPTSYGEKLAMTYSALFCETSAKDGSNIIEAVLHLAREVTKHADDYKEPVSVAKLSGNHTKKMS 699

  Fly   194 S 194
            |
Zfish   700 S 700

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab8NP_524172.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 70/171 (41%)
rasefXP_699335.4 FRQ1 <4..72 CDD:444056
SMC_prok_B <139..>330 CDD:274008
Rab 508..672 CDD:206640 69/166 (42%)
Blue background indicates that the domain is not in the aligned region.

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