DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab8 and rab3a

DIOPT Version :10

Sequence 1:NP_524172.1 Gene:Rab8 / 40168 FlyBaseID:FBgn0262518 Length:207 Species:Drosophila melanogaster
Sequence 2:NP_001016426.1 Gene:rab3a / 549180 XenbaseID:XB-GENE-489999 Length:220 Species:Xenopus tropicalis


Alignment Length:191 Identity:97/191 - (50%)
Similarity:138/191 - (72%) Gaps:4/191 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KTYDYLFKLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDNKKIKLQIWDTAGQ 67
            :.:||:||:|:||:|.||||..|||:::|:|...|:||:|||||::||..::|:|||||||||||
 Frog    17 QNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 81

  Fly    68 ERFRTITTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKMLLGNKCELTDKRQVS 132
            ||:|||||||||||||.:|:||||.|:||..:::|...|:..:..:.:.:|:||||::.|:|.||
 Frog    82 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVS 146

  Fly   133 KERGEQLAIEYGIKFMETSAKASINVEEAFLTLASDIKAKTEKRMEANNP----PKGGHQL 189
            .|||.|||...|.:|.|.|||.:|||::.|..|...|..|..:.::..:|    .|.|.||
 Frog   147 SERGRQLAEHLGFEFFEASAKDNINVKQTFERLVDIICEKMSESLDTADPAVTGAKQGPQL 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab8NP_524172.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 91/165 (55%)
rab3aNP_001016426.1 Rab3 22..186 CDD:206657 89/163 (55%)

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