DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab8 and rab3c

DIOPT Version :10

Sequence 1:NP_524172.1 Gene:Rab8 / 40168 FlyBaseID:FBgn0262518 Length:207 Species:Drosophila melanogaster
Sequence 2:NP_001002530.2 Gene:rab3c / 436803 ZFINID:ZDB-GENE-040718-263 Length:224 Species:Danio rerio


Alignment Length:184 Identity:93/184 - (50%)
Similarity:134/184 - (72%) Gaps:0/184 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KTYDYLFKLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDNKKIKLQIWDTAGQ 67
            :.:||:||||:||:|.||||..|||:::|.|.:.|:||:|||||::|:..::|:|||||||||||
Zfish    21 QNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTSAFVSTVGIDFKVKTVYKNDKRIKLQIWDTAGQ 85

  Fly    68 ERFRTITTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKMLLGNKCELTDKRQVS 132
            ||:|||||||||||||.:|:||||.|:||..:::|...|:..:..:.:.:|.||||::.::|.||
Zfish    86 ERYRTITTAYYRGAMGFILMYDITNEESFAAVQDWATQIKTYSWDNAQVILAGNKCDMEEERIVS 150

  Fly   133 KERGEQLAIEYGIKFMETSAKASINVEEAFLTLASDIKAKTEKRMEANNPPKGG 186
            .:.|..||.:.|.:|.|||||.:|||::.|..|...|..|....:||:....||
Zfish   151 VDSGRLLAEQLGFEFFETSAKDNINVKQTFDRLVDIICDKMSDTLEADPAAAGG 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab8NP_524172.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 88/165 (53%)
rab3cNP_001002530.2 Rab3 26..190 CDD:206657 86/163 (53%)

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