DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab8 and Rab23

DIOPT Version :9

Sequence 1:NP_001246837.1 Gene:Rab8 / 40168 FlyBaseID:FBgn0262518 Length:207 Species:Drosophila melanogaster
Sequence 2:NP_649574.1 Gene:Rab23 / 40701 FlyBaseID:FBgn0037364 Length:268 Species:Drosophila melanogaster


Alignment Length:179 Identity:64/179 - (35%)
Similarity:103/179 - (57%) Gaps:5/179 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDNKKIKLQIWDTAGQERFRTIT 74
            |::::|:.||||:.::.|:.:..|...:..|||:||..|.||:|.:.:::.:|||||||.|..||
  Fly    39 KVVIVGNGGVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIEIDGEDVRIMLWDTAGQEEFDCIT 103

  Fly    75 TAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKMLLGNKCELTDKRQVSKERGEQL 139
            .||||||...:||:..|...||:.||:|.|.: ||...::..:::.||.:|.::..|:.:..|.|
  Fly   104 KAYYRGAQASVLVFSTTDRASFDAIKDWKRKV-ENECNEIPTVIVQNKIDLIEQAVVTADEVETL 167

  Fly   140 AIEYGIKFMETSAKASINVEEAFLTLASDIKAKTEKRMEANNPPKGGHQ 188
            |.....:.:.||.|..|||...|..||:    |..:.|..:.....|:|
  Fly   168 AKLLNCRLIRTSVKEDINVASVFRYLAT----KCHQLMTQSYDQVAGNQ 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab8NP_001246837.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 60/161 (37%)
Rab23NP_649574.1 Ras 50..199 CDD:278499 56/153 (37%)
Rab23_like 50..197 CDD:133306 55/151 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454412
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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