DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab8 and Rab40b

DIOPT Version :9

Sequence 1:NP_001246837.1 Gene:Rab8 / 40168 FlyBaseID:FBgn0262518 Length:207 Species:Drosophila melanogaster
Sequence 2:NP_001100546.1 Gene:Rab40b / 303754 RGDID:1305663 Length:279 Species:Rattus norvegicus


Alignment Length:164 Identity:74/164 - (45%)
Similarity:101/164 - (61%) Gaps:1/164 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KTYDYLFKLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDNKKIKLQIWDTAGQ 67
            :.||:|.|.||:|||.|||..||....:.|..:.:....|||.|..||.||.:::|||:|||:||
  Rat    10 RAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDHKTTTILLDGRRVKLQLWDTSGQ 74

  Fly    68 ERFRTITTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKMLLGNKCELTDKRQVS 132
            .||.||..:|.|||.|::|||||....||:.|..||:.|:|:|.. |.|:|:||:..|..||||.
  Rat    75 GRFCTIFRSYSRGAQGVILVYDIANRWSFDGINRWIKEIDEHAPG-VPKILVGNRLHLAFKRQVP 138

  Fly   133 KERGEQLAIEYGIKFMETSAKASINVEEAFLTLA 166
            .|:.:..|...|:.|.|.|...:.|:.|:|..||
  Rat   139 TEQAQAYAERLGVTFFEVSPLCNFNITESFTELA 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab8NP_001246837.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 73/161 (45%)
Rab40bNP_001100546.1 Rab40 10..279 CDD:133321 74/164 (45%)
SOCS_Rab40 188..230 CDD:239711
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0078
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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