DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab8 and K02E10.1

DIOPT Version :9

Sequence 1:NP_001246837.1 Gene:Rab8 / 40168 FlyBaseID:FBgn0262518 Length:207 Species:Drosophila melanogaster
Sequence 2:NP_508455.2 Gene:K02E10.1 / 180554 WormBaseID:WBGene00019317 Length:218 Species:Caenorhabditis elegans


Alignment Length:170 Identity:81/170 - (47%)
Similarity:123/170 - (72%) Gaps:1/170 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TYDYLFKLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDNKKIKLQIWDTAGQE 68
            :|::|||::::||...||:|||.||:|::|....|||:|:|||::||:|...||:|::|||||.|
 Worm     2 SYNHLFKIVVVGDHNCGKSCILLRFAENSFRMDHISTLGVDFKLKTIKLGRDKIRLELWDTAGME 66

  Fly    69 RFRTITTAYYRGAMGIMLVYDITQEKSFENI-KNWIRNIEENASADVEKMLLGNKCELTDKRQVS 132
            |:|||..:||..|.|:|.|||:|.||||||: |.|::.|:::|..:...||:|||.::..:|:|.
 Worm    67 RYRTIYNSYYHSAHGVMCVYDMTNEKSFENLEKYWLKEIKQHAPPNAVLMLVGNKADMDQERKVD 131

  Fly   133 KERGEQLAIEYGIKFMETSAKASINVEEAFLTLASDIKAK 172
            .:|.|:||...|:...|.|||..||.||||.||.:.::.:
 Worm   132 FDRAEKLASRLGVSLYEVSAKTGINCEEAFHTLTAAMRER 171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab8NP_001246837.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 80/166 (48%)
K02E10.1NP_508455.2 Rab 7..165 CDD:206640 78/157 (50%)
RAB 7..164 CDD:197555 77/156 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0078
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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