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Protein Alignment Papss and Papss2

DIOPT Version :9

Sequence 1:	NP_730460.1	Gene:	Papss / 40167	FlyBaseID:	FBgn0020389	Length:	657	Species:	Drosophila melanogaster
Sequence 2:	NP_035994.2	Gene:	Papss2 / 23972	MGIID:	1330223	Length:	621	Species:	Mus musculus

Alignment Length:	616	Identity:	387/616 - (62%)
Similarity:	485/616 - (78%)	Gaps:	12/616 - (1%)

- Green bases have known domain annotations that are detailed below.

  Fly    45 QVATNVTEQKHHVTRETRGKNLGLCRGFRGCTVWLTGLSGAGKTSIAFELEAYLVSRGIPAYGLD 109
            |.:|||..|.|||:|..||:.:|...||||||||||||||||||:|:|.||.||||..||.|.||
Mouse    14 QKSTNVVYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLD 78

  Fly   110 GDNIRTGLNKNLGFTPADREENIRRVGEVAKLFADSGVVAICSFVSPFADDREMARKIHKDAGLK 174
            |||:|.||||||||:..||||||||:.|||:||||:|:|.|.||:||||.|||.|||||:.|||.
Mouse    79 GDNVRHGLNKNLGFSAGDREENIRRIAEVARLFADAGLVCITSFISPFAKDRENARKIHESAGLP 143

  Fly   175 FYEIFVDTPLDVCETRDVKGLYKKAREGVIKGFTGITQEYERPQMPELVVNTHGYTVRESTQKLV 239
            |:|||||.||::||:||||||||:||.|.|||||||..:||:|:.||.|:.|:..:|.:..|::|
Mouse   144 FFEIFVDAPLNICESRDVKGLYKRARAGEIKGFTGIDSDYEKPETPECVLKTNLSSVSDCVQQVV 208

  Fly   240 TLLEQEGIIPRSLRDVDLLPELYPSESIATEALRHEAESLQAIEISTVELQWVQVLAEGWAYPLR 304
            .||:::.|:|.:  .:..:.||:..|: ..:.:|.|||:|.::.|:.::|||||:|:||||.||:
Mouse   209 ELLQEQNIVPHT--TIKGIHELFVPEN-KVDQIRAEAETLPSLPITKLDLQWVQILSEGWATPLK 270

  Fly   305 GFMREDEYLQTLHFNTLQSGM---DGSYRENHSVPIVLSATQADKDRLDGCSSLTLKYQGKAVAI 366
            |||||.||||||||:||..|:   ||..  |.|:||||..:..||.||:|||...|.|:|:.||:
Mouse   271 GFMREKEYLQTLHFDTLLDGVVPRDGVI--NMSIPIVLPVSADDKARLEGCSKFALMYEGRRVAL 333

  Fly   367 LRRPEFYFQRKEERLARQFGTSNPNHPYSKQVYESGDYLVGGDLAVIERIRWEDGLDQYRLTPNE 431
            |:.||||..|||||.:|.:||:...||:.|.|.||||:||||||.|:|||||:||||||||||.|
Mouse   334 LQDPEFYEHRKEERCSRVWGTATAKHPHIKMVMESGDWLVGGDLQVLERIRWDDGLDQYRLTPLE 398

  Fly   432 LRRRFKELNADAIFAFQLRNPIHNGHALLMQDTRRQLLERGFKQPVLLLHPLGGWTKDDDVPLDV 496
            |:::.|::||||:||||||||:|||||||||||||:|||||:|.|||||||||||||||||||:.
Mouse   399 LKQKCKDMNADAVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKDDDVPLEW 463

  Fly   497 RMKQHQAVLDAGVLRREDTVLAIFPSPMMYAGPTEVQWHAKARMNAGANFYIVGRDPAGMPHPAK 561
            |||||.|||:..||..:.|::|||||||:||||||||||.:.||.||||||||||||||||||
Mouse   464 RMKQHAAVLEERVLDPKSTIVAIFPSPMLYAGPTEVQWHCRCRMIAGANFYIVGRDPAGMPHP-- 526

  Fly   562 ETYPDGNLYDATHGARVLKMAQGLDSMEILPFRVAAYDKSASRMAFFEPKRKDEFEFISGTKMRT 626
            ||..|  ||:.|||.:||.||.||.|:||:|||||||:|....|.|::|.|.:||:|||||:||.
Mouse   527 ETKKD--LYEPTHGGKVLSMAPGLTSVEIIPFRVAAYNKIKKAMDFYDPARHEEFDFISGTRMRK 589

  Fly   627 LAKTGASPPDGFMEPEAWRILATYYQNLPQS 657
            ||:.|..||||||.|:||::|..||::|.::
Mouse   590 LAREGEDPPDGFMAPKAWKVLTDYYRSLEKT 620

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.