DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trc and AT1G03920

DIOPT Version :9

Sequence 1:NP_001262071.1 Gene:trc / 40165 FlyBaseID:FBgn0003744 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_001323295.1 Gene:AT1G03920 / 839369 AraportID:AT1G03920 Length:569 Species:Arabidopsis thaliana


Alignment Length:463 Identity:231/463 - (49%)
Similarity:301/463 - (65%) Gaps:24/463 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 DGASIRFSDHTLDKATKAKVTLENYYSNLVTQYGERKQRLAKLEAQLKDESLSEAQRQEKRLQHA 74
            ||.::  |:.|..|...||..:||:|...:....|||:|...||.:|.|..:.|..:........
plant    56 DGEAL--SNSTKQKVAAAKQYIENHYKEQMKNLNERKERRTTLEKKLADADVCEEDQTNLMKFLE 118

  Fly    75 QKETEYLRLKRLRLGVEDFEALKVIGRGAFGEVRLVQKKDTGHVYAMKVLRKADMLEKEQVAHVR 139
            :|||||:||:|.::|.:|||.|.:||:|||||||:|::.:||||:|||.|:|::||.:.||.|||
plant   119 KKETEYMRLQRHKMGADDFELLTMIGKGAFGEVRVVREINTGHVFAMKKLKKSEMLRRGQVEHVR 183

  Fly   140 AERDVLVEADHQWVVKMYYSFQDPVNLYLIMEFLPGGDMMTLLMKKDTLSEEGTQFYISETALAI 204
            |||::|.|.|...:||:|.||||...||||||:|||||||||||:||||||:..:|||:|:.|||
plant   184 AERNLLAEVDSNCIVKLYCSFQDNEYLYLIMEYLPGGDMMTLLMRKDTLSEDEAKFYIAESVLAI 248

  Fly   205 DSIHKLGFIHRDIKPDNLLLDARGHLKLSDFGLCTGLKKSHRTDFYRDLSQAKPSDFI------- 262
            :|||...:|||||||||||||..|||:|||||||..|          |.|.....||.       
plant   249 ESIHNRNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPL----------DCSVIDGEDFTVGNAGSG 303

  Fly   263 GTCASLSCSPMDSKR-RAESWKRNRRALAYSTVGTPDYIAPEVFLQTGYGPACDWWSLGVIMYEM 326
            |...|:|.:|..|:: :.|.|::|||.||||||||||||||||.|:.|||..|||||||.|||||
plant   304 GGSESVSTTPKRSQQEQLEHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEM 368

  Fly   327 LMGYPPFCSDNPQDTYRKVMNWRETLIFPPEIPISEEAKETIINFCCEADRRLGSQRGLEDLKSV 391
            |:|||||.:|:|..|.||::||:..|.||.|..:|..|::.|....|..::|||| .|...:|:.
plant   369 LVGYPPFYADDPMSTCRKIVNWKTHLKFPEESRLSRGARDLIGKLLCSVNQRLGS-TGASQIKAH 432

  Fly   392 PFFRGVDWEHIRERPAAIPVEVRSIDDTSNFDEF--PDVSLEIPSAPIPQGGEI-AKDWVFINYT 453
            |:|.||.||.|.:..||...||....||.||::|  .|...:.||...|....: :||..|:.||
plant   433 PWFEGVQWEKIYQMEAAFIPEVNDDLDTQNFEKFDEEDNQTQAPSRTGPWRKMLSSKDINFVGYT 497

  Fly   454 YKRFEVRN 461
            ||.||:.|
plant   498 YKNFEIVN 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trcNP_001262071.1 OmpH 16..>85 CDD:214922 24/68 (35%)
STKc_NDR_like 91..455 CDD:270750 198/374 (53%)
AT1G03920NP_001323295.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 330 1.000 Domainoid score I262
eggNOG 1 0.900 - - E1_KOG0605
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 429 1.000 Inparanoid score I419
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D759391at2759
OrthoFinder 1 1.000 - - FOG0000273
OrthoInspector 1 1.000 - - otm2526
orthoMCL 1 0.900 - - OOG6_100850
Panther 1 1.100 - - O PTHR24356
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X595
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.830

Return to query results.
Submit another query.