DRSC/TRiP Functional Genomics Resources

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Protein Alignment trc and cdc42bpab

DIOPT Version :9

Sequence 1:NP_001262071.1 Gene:trc / 40165 FlyBaseID:FBgn0003744 Length:463 Species:Drosophila melanogaster
Sequence 2:XP_021324156.1 Gene:cdc42bpab / 566003 ZFINID:ZDB-GENE-080219-17 Length:1800 Species:Danio rerio


Alignment Length:418 Identity:176/418 - (42%)
Similarity:243/418 - (58%) Gaps:63/418 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 LKDESLSEAQRQEKR----LQHAQKETEYLRLKRLRLGVEDFEALKVIGRGAFGEVRLVQKKDTG 116
            |.||..|...|:||.    |..|:..|.  ::|::||..||||.||||||||||||.:|:.|:|.
Zfish    38 LYDECSSSPIRREKNVLEFLDWAKPFTS--KVKQMRLHKEDFEILKVIGRGAFGEVAVVKVKNTD 100

  Fly   117 HVYAMKVLRKADMLEKEQVAHVRAERDVLVEADHQWVVKMYYSFQDPVNLYLIMEFLPGGDMMTL 181
            .|:|||:|.|.:||::.:.|..|.||||||..|.||:..::|:|||..||||:|::..|||::||
Zfish   101 KVFAMKILNKWEMLKRAETACFREERDVLVNGDCQWITTLHYAFQDENNLYLVMDYYVGGDLLTL 165

  Fly   182 LMK-KDTLSEEGTQFYISETALAIDSIHKLGFIHRDIKPDNLLLDARGHLKLSDFGLCTGLKKSH 245
            |.| :|.|.|:..:||::|..|||||:|:|.::||||||||:|:|..||::|:|||.|..|.:. 
Zfish   166 LSKFEDRLPEDMAKFYLAEMVLAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMED- 229

  Fly   246 RTDFYRDLSQAKPSDFIGTCASLSCSPMDSKRRAESWKRNRRALAYSTVGTPDYIAPEVF--LQT 308
                             ||..|                    ::|   |||||||:||:.  ::.
Zfish   230 -----------------GTVQS--------------------SVA---VGTPDYISPEILQAMED 254

  Fly   309 G---YGPACDWWSLGVIMYEMLMGYPPFCSDNPQDTYRKVMNWR-------ETLIFPPEI-PISE 362
            |   |||.||||||||.|||||.|..||.:::..:||.|:||.:       |...||.:: .:||
Zfish   255 GKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKSSQPNDEERFQFPLQVTDVSE 319

  Fly   363 EAKETIINFCCEADRRLGSQRGLEDLKSVPFFRGVDWEHIRERPAAIPVEVRSIDDTSNFDEFPD 427
            :||:.:....|..:.||| |.|:||.|..|||.|:||::||...|....||.|..||||||...|
Zfish   320 DAKDLVRRLICSREHRLG-QNGIEDFKQHPFFTGIDWDNIRTCEAPYIPEVSSPTDTSNFDVDDD 383

  Fly   428 VSLEIPSAPIPQGGEIAKDWV-FINYTY 454
            ......:.|.|.....:...: |:.:||
Zfish   384 CLKNCETLPPPSHTAFSGHHLPFVGFTY 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trcNP_001262071.1 OmpH 16..>85 CDD:214922 10/32 (31%)
STKc_NDR_like 91..455 CDD:270750 163/379 (43%)
cdc42bpabXP_021324156.1 STKc_MRCK_alpha 4..419 CDD:270773 176/418 (42%)
SbcC 438..>945 CDD:223496
KELK 535..613 CDD:318090
DMPK_coil 887..947 CDD:117396
C1_1 1057..1107 CDD:278556
PH_MRCK 1117..1251 CDD:269949
CNH 1277..1539 CDD:307087
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D759391at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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