DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trc and gwl

DIOPT Version :9

Sequence 1:NP_001262071.1 Gene:trc / 40165 FlyBaseID:FBgn0003744 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_524860.2 Gene:gwl / 45969 FlyBaseID:FBgn0260399 Length:846 Species:Drosophila melanogaster


Alignment Length:828 Identity:142/828 - (17%)
Similarity:218/828 - (26%) Gaps:487/828 - (58%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 QLKDESLSEAQRQEKRLQHAQKETEYLRLKRLRLGVEDFEALKVIGRGAFGEVRLVQK-KDTGHV 118
            ||.|:......:.|...|:|:..|           ::||..:|.|.|||||:|.|..| .|:..:
  Fly    30 QLLDKINILTTKPENHSQNAKLPT-----------IKDFVIIKPISRGAFGKVFLGYKNNDSKRL 83

  Fly   119 YAMKVLRKADMLEKEQVAHVRAERDVLVEADHQWVVKMYYSFQDPVNLYLIMEFLPGGDMMTLLM 183
            :|:||:||::|:.|..|:.|..||:.|..:..|:.|.::||.|....:||:||::.|||:.:||.
  Fly    84 FAIKVMRKSEMINKNMVSQVITERNALALSRSQFCVSLFYSLQSLSYVYLVMEYMVGGDLKSLLA 148

  Fly   184 KKDTLSEEGTQFYISETALAIDSIHKLGFIHRDIKPDNLLLDARGHLKLSDFGLCTGLKKSHRTD 248
            ......|...:||::|..:|:..:|:.|.:||||||||:||.:.||:||:||||       .:.|
  Fly   149 MFGYFDEPTARFYVAEMVMALQYLHQHGIVHRDIKPDNMLLSSSGHVKLTDFGL-------SKID 206

  Fly   249 FYRDL------------------------------SQAKPSDF---------------------- 261
            ..|||                              |:.|.:||                      
  Fly   207 MRRDLEISDLINCSPNLNARTPGQLLSLTSHLSFGSEKKLNDFGSVSSGQNNGMGSVATGTSHLL 271

  Fly   262 ----------------------------------------------------------------- 261
                                                                             
  Fly   272 QAINKHSLIMELSDSEGDTSLNDAEKTSDSKISGVSPFFSAEEANESITHTCTTNVNPQDSSSSC 336

  Fly   262 -IGTC--ASLS-CSP-------------MDSKRRAE----------------------------- 280
             ..||  |.|| |||             :.||||.|                             
  Fly   337 SFHTCNSADLSKCSPPLESKDGAAAGNAIPSKRRVEFVLDAAPCQGCKLAEQDSSNMATNDGKHL 401

  Fly   281 ----------------------------------------------------------------- 280
                                                                             
  Fly   402 PKIDNAIEASFEFSMVRRRSVDERNRISKGPEDSGVSSRKGDDYSSCHLNLNSESTASSIEKNVD 466

  Fly   281 ----------------------------------------------------------------- 280
                                                                             
  Fly   467 NLSQSKEDFSCSDYSRSYNVTNGNEMSGINMNSPFRNLSKHFKRPDFLRGMKRKINLVNRSDNMS 531

  Fly   281 -----------------------------SWKRNRRA---------------------------- 288
                                         |..:.|:|                            
  Fly   532 SMDTDGCSSSNGSTNTGLTQEIEILNIGSSTPKKRKARSSPIRGVLKVRSLSDDEMPINHLLGPE 596

  Fly   289 -----LAYST------------------------------------------------------- 293
                 :.:||                                                       
  Fly   597 ANVANVVFSTPVSSQKLPRRDGGLLGKLKATRFALPLSIENKKREHATADKMSGIQYHLKLSDDP 661

  Fly   294 ------------------------------------------VGTPDYIAPEVFLQTGYGPACDW 316
                                                      :|||||:|||:.|:.|:|||.||
  Fly   662 TMSPINHGAGNLPKTPKNVNINTPFRTPKSVRRGARVSNERILGTPDYLAPELLLKQGHGPAVDW 726

  Fly   317 WSLGVIMYEMLMGYPPFCSDNPQDTYRKVMN----WRETLIFPPEIPISEEAKETI-INFCCEAD 376
            |:|||..||.:.|.|||..:.||..:..::|    |.|     .:..:|.|:.|.: :....:.:
  Fly   727 WALGVCFYEFMTGIPPFNDETPQKVFDNILNKNIEWPE-----GDEALSVESMEAVELLLTMDPN 786

  Fly   377 RRLGSQRGLEDLKSVPFFRGVDWEHI-RERPAAIPVEVRSIDDTSNFD 423
            .|..:    ::::.:..|..:|||:| ...|..:|.. .:..||..||
  Fly   787 ERPAA----KEVQQMRHFACIDWENIGNTEPPFVPTP-DNPTDTGYFD 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trcNP_001262071.1 OmpH 16..>85 CDD:214922 7/29 (24%)
STKc_NDR_like 91..455 CDD:270750 135/792 (17%)
gwlNP_524860.2 STKc_MASTL 52..>255 CDD:270761 73/220 (33%)
S_TKc 57..>205 CDD:214567 63/154 (41%)
PKc_like <655..835 CDD:304357 45/185 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24356
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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