DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trc and rock2a

DIOPT Version :9

Sequence 1:NP_001262071.1 Gene:trc / 40165 FlyBaseID:FBgn0003744 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_777288.1 Gene:rock2a / 317747 ZFINID:ZDB-GENE-030115-3 Length:1375 Species:Danio rerio


Alignment Length:443 Identity:171/443 - (38%)
Similarity:247/443 - (55%) Gaps:79/443 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 ERK--QRLAKLEAQLKD-------ESLSE------------AQRQEKRLQHAQKETEYL--RLKR 85
            ||:  .||.:|||.:||       |||.:            |.|:.|.:::.....|.:  .::.
Zfish     6 ERRMENRLRQLEAMIKDPRSAINLESLLDSMNALVLDLDFPALRKNKNIENFLNRYEKVMNHIRE 70

  Fly    86 LRLGVEDFEALKVIGRGAFGEVRLVQKKDTGHVYAMKVLRKADMLEKEQVAHVRAERDVLVEADH 150
            |::..|||:.:|||||||||||:||:.|.:..|||||||.|.:|:::...|....|||::..||.
Zfish    71 LQMRPEDFDRVKVIGRGAFGEVQLVRHKASQKVYAMKVLSKFEMIKRSDSAFFWEERDIMAFADS 135

  Fly   151 QWVVKMYYSFQDPVNLYLIMEFLPGGDMMTLLMKKDTLSEEGTQFYISETALAIDSIHKLGFIHR 215
            .|||::..:|||..:||::||::||||::.|....| :.|:..:||.:|..||:|:||.:|||||
Zfish   136 PWVVQLCCAFQDDRSLYMVMEYMPGGDLVNLTSTYD-VPEKWAKFYTAEVVLALDAIHSMGFIHR 199

  Fly   216 DIKPDNLLLDARGHLKLSDFGLCTGLKKSHRTDFYRDLSQAKPSDFIGTCASLSCSPMDSKRRAE 280
            |:||||:|||..|||||:|||.|..:.                    || ..:.|.         
Zfish   200 DVKPDNMLLDRYGHLKLADFGTCMKMD--------------------GT-GMVHCD--------- 234

  Fly   281 SWKRNRRALAYSTVGTPDYIAPEVFLQTG----YGPACDWWSLGVIMYEMLMGYPPFCSDNPQDT 341
                       :.|||||||:|||....|    ||..|||||:||.:||||:|..||.:|:...|
Zfish   235 -----------TAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFIYEMLVGDTPFYADSLVGT 288

  Fly   342 YRKVMNWRETLIFPPEIPISEEAKETIINFCCEADRRLGSQRGLEDLKSVPFFRGVDW--EHIRE 404
            |.|:|:.:.:|.||.::.||:|.|..|..|..:.:.||| :.|:|::|..||||...|  ..|||
Zfish   289 YSKIMDHKNSLNFPDDVEISQEGKNIICAFLTDREVRLG-RSGVEEIKRHPFFRNDQWTFSTIRE 352

  Fly   405 RPAAIPVEVRSIDDTSNFDEFPDVSLEIPSAPIPQ---GGEIAKDWVFINYTY 454
            ..|.:..|:.|..|||||||..:...|:.:.|.|:   |.::.    |:.:||
Zfish   353 TAAPVVPELSSDIDTSNFDEIEEDKGEVETFPTPKAFVGNQLP----FVGFTY 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trcNP_001262071.1 OmpH 16..>85 CDD:214922 16/63 (25%)
STKc_NDR_like 91..455 CDD:270750 154/373 (41%)
rock2aNP_777288.1 STKc_ROCK2 25..403 CDD:270771 162/424 (38%)
S_TKc 78..340 CDD:214567 128/304 (42%)
DUF4631 431..1028 CDD:292090
HR1_ROCK2 491..557 CDD:212028
Rho_Binding 965..1032 CDD:286056
PH_ROCK 1141..1246 CDD:269948
C1 1250..1304 CDD:237996
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D759391at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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