DRSC/TRiP Functional Genomics Resources

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Protein Alignment trc and Rock2

DIOPT Version :9

Sequence 1:NP_001262071.1 Gene:trc / 40165 FlyBaseID:FBgn0003744 Length:463 Species:Drosophila melanogaster
Sequence 2:XP_036013163.1 Gene:Rock2 / 19878 MGIID:107926 Length:1472 Species:Mus musculus


Alignment Length:444 Identity:163/444 - (36%)
Similarity:250/444 - (56%) Gaps:79/444 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 GERKQRLAKLEAQLKD-------ESLSE------------AQRQEKRLQHAQKETEYL--RLKRL 86
            |..:||  ||||.::|       |||.:            |.|:.|.:.:.....|.:  :::.|
Mouse    23 GAGRQR--KLEALIRDPRSPINVESLLDGLNSLVLDLDFPALRKNKNIDNFLNRYEKIVKKIRGL 85

  Fly    87 RLGVEDFEALKVIGRGAFGEVRLVQKKDTGHVYAMKVLRKADMLEKEQVAHVRAERDVLVEADHQ 151
            ::..||::.:|||||||||||:||:.|.:..|||||:|.|.:|:::...|....|||::..|:..
Mouse    86 QMKAEDYDVVKVIGRGAFGEVQLVRHKASQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSP 150

  Fly   152 WVVKMYYSFQDPVNLYLIMEFLPGGDMMTLLMKKDTLSEEGTQFYISETALAIDSIHKLGFIHRD 216
            |||:::.:|||...||::||::||||::.|:...| :.|:..:||.:|..||:|:||.:|.||||
Mouse   151 WVVQLFCAFQDDRYLYMVMEYMPGGDLVNLMSNYD-VPEKWAKFYTAEVVLALDAIHSMGLIHRD 214

  Fly   217 IKPDNLLLDARGHLKLSDFGLCTGLKKSHRTDFYRDLSQAKPSDFIGTCASLSCSPMDSKRRAES 281
            :||||:|||..|||||:|||.|..:.::                     ..:.|.          
Mouse   215 VKPDNMLLDKHGHLKLADFGTCMKMDET---------------------GMVHCD---------- 248

  Fly   282 WKRNRRALAYSTVGTPDYIAPEVFLQTG----YGPACDWWSLGVIMYEMLMGYPPFCSDNPQDTY 342
                      :.|||||||:|||....|    ||..|||||:||.::|||:|..||.:|:...||
Mouse   249 ----------TAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTY 303

  Fly   343 RKVMNWRETLIFPPEIPISEEAKETIINFCCEADRRLGSQRGLEDLKSVPFFRG--VDWEHIRER 405
            .|:|:.:.:|.||.:..||:.||..|..|..:.:.||| :.|:|::|..|||:.  .:|::|||.
Mouse   304 SKIMDHKNSLCFPEDTEISKHAKNLICAFLTDREVRLG-RNGVEEIKQHPFFKNDQWNWDNIRET 367

  Fly   406 PAAIPVEVRSIDDTSNFDEFPDVSLEIPSAPIPQ---GGEIAKDWVFINYTYKR 456
            .|.:..|:.|..|:||||:..|...::.:.|||:   |.::.    ||.:||.|
Mouse   368 AAPVVPELSSDIDSSNFDDIEDDKGDVETFPIPKAFVGNQLP----FIGFTYFR 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trcNP_001262071.1 OmpH 16..>85 CDD:214922 15/62 (24%)
STKc_NDR_like 91..455 CDD:270750 145/372 (39%)
Rock2XP_036013163.1 STKc_ROCK2 39..417 CDD:270771 154/424 (36%)
Smc <437..1101 CDD:224117
ROCK_SBD 856..936 CDD:409019
PH_ROCK 1208..1314 CDD:269948
C1_ROCK2 1307..1377 CDD:410425
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D759391at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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