DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trc and Lats1

DIOPT Version :9

Sequence 1:NP_001262071.1 Gene:trc / 40165 FlyBaseID:FBgn0003744 Length:463 Species:Drosophila melanogaster
Sequence 2:NP_034820.1 Gene:Lats1 / 16798 MGIID:1333883 Length:1129 Species:Mus musculus


Alignment Length:449 Identity:188/449 - (41%)
Similarity:282/449 - (62%) Gaps:24/449 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 KVTLENYYSNLVTQYGERKQRLAKLEAQLKDESLSEAQRQEKRLQHAQKETEYLRLKRLRLGVED 92
            |..:|.:..|::..:.:|..|..:||.::....||:..:.:.|....|||:.|:||||.::....
Mouse   639 KFFMEQHVENVLKSHQ
QRLHRKKQLENEMMRVGLSQDAQDQMRKMLCQKESNYIRLKRAKMDKSM 703

  Fly    93 FEALKVIGRGAFGEVRLVQKKDTGHVYAMKVLRKADMLEKEQVAHVRAERDVLVEADHQWVVKMY 157
            |..:|.:|.||||||.|.:|.||..:||.|.|||.|:|.:.|||||:||||:|.|||::|||::|
Mouse   704 FVKIKTLGIGAFGEVCLARKVDTKALYATKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLY 768

  Fly   158 YSFQDPVNLYLIMEFLPGGDMMTLLMKKDTLSEEGTQFYISETALAIDSIHKLGFIHRDIKPDNL 222
            |||||..|||.:|:::||||||:||::.....|...:|||:|...|::|:||:|||||||||||:
Mouse   769 YSFQDKDNLYFVMDYIPGGDMMSLLIRMGIFPENLARFYIAELTCAVESVHKMGFIHRDIKPDNI 833

  Fly   223 LLDARGHLKLSDFGLCTGLKKSHRTDFYR--DLSQAKPSDFI---GTCASLSC----SPMDSKRR 278
            |:|..||:||:|||||||.:.:|.:.:|:  |..:....||.   |..::..|    .|::  ||
Mouse   834 LIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHPRQDSMDFSNEWGDPSNCRCGDRLKPLE--RR 896

  Fly   279 AESWKRNRRALAYSTVGTPDYIAPEVFLQTGYGPACDWWSLGVIMYEMLMGYPPFCSDNPQDTYR 343
            |.  ::::|.||:|.||||:||||||.|:|||...|||||:|||::|||:|.|||.:..|.:|..
Mouse   897 AA--RQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILFEMLVGQPPFLAQTPLETQM 959

  Fly   344 KVMNWRETLIFPPEIPISEEAKETIINFCCEADRRLGSQRGLEDLKSVPFFRGVDW-EHIRERPA 407
            ||:||:.:|..||:..:|.||.:.||..|...:.||| :.|.:::|:.|||:.:|: ..:|::.|
Mouse   960 KVINWQTSLHIPPQAKLSPEASDLIIKLCRGPEDRLG-KNGADEIKAHPFFKTIDFSSDLRQQSA 1023

  Fly   408 AIPVEVRSIDDTSNFDEFPDVSLEIPSAPIPQGGEIAKDW---------VFINYTYKRF 457
            :...::....||||||......|....:......:....|         .|..:|::||
Mouse  1024 SYIPKITHPTDTSNFDPVDPDKLWSDGSEEENISDTLNGWYKNGKHPEHAFYEFTFRRF 1082

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trcNP_001262071.1 OmpH 16..>85 CDD:214922 16/56 (29%)
STKc_NDR_like 91..455 CDD:270750 168/382 (44%)
Lats1NP_034820.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..71
UBA_like_SF 103..143 CDD:304366
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 148..216
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 228..276
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 292..317
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 363..407
PPxY motif 1 372..375
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 432..492
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 513..630
Interaction with YAP1. /evidence=ECO:0000250 525..654 3/14 (21%)
PPxY motif 2 555..558
STKc_LATS1 702..1083 CDD:270775 170/386 (44%)
S_TKc 704..1009 CDD:214567 153/309 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1104..1129
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D759391at2759
OrthoFinder 1 1.000 - - FOG0000273
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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