DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trc and rskrb

DIOPT Version :9

Sequence 1:NP_001262071.1 Gene:trc / 40165 FlyBaseID:FBgn0003744 Length:463 Species:Drosophila melanogaster
Sequence 2:XP_003200943.1 Gene:rskrb / 100537227 ZFINID:ZDB-GENE-120215-252 Length:445 Species:Danio rerio


Alignment Length:371 Identity:95/371 - (25%)
Similarity:159/371 - (42%) Gaps:67/371 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 RLRLGVEDFEALKVIGRGAFGEVRLVQKKDTGHVYAMKVLRKADMLEKEQVAHVRAERDVLVEAD 149
            |:..|.|.|:.|..|.:|:||.:..|:.|.....||:||:.|:::|....:...:.|..|..:..
Zfish    94 RIVPGQEHFQVLGYIAKGSFGPILKVKDKSKQKTYAVKVIPKSEILRLGVLEQSKEEVIVQRQVR 158

  Fly   150 HQWVVKMYYSFQDPVNLYLIMEFLPGGDMMTLLMKKDTLSEEGTQFYISETALAIDSIHKLGFIH 214
            |.:|..:...:|...::|::.::...||:.|..:......|:..:.:.:|...|:..:|....||
Zfish   159 HPFVHDLQDCWQTQRHIYIMCDYCSTGDLYTYWVMIGQFGEDVVKVFAAELGSALGFLHDCAIIH 223

  Fly   215 RDIKPDNLLLDARGHLKLSDFGLCTGLKKSHRTDFYRDLSQAKPSDFIGTCASLSCSPMDSKRRA 279
            ||:|.:|:||..:|||:|:||||...|::..|                                 
Zfish   224 RDVKMENVLLTDQGHLRLADFGLSRRLERGGR--------------------------------- 255

  Fly   280 ESWKRNRRALAYSTVGTPDYIAPEVFLQTGYGPACDWWSLGVIMYEMLMGYPPFCSDNPQDTYRK 344
                      |::..||..|:||||.....|..|.||||||::::.:..|..|.    |.:....
Zfish   256 ----------AFTICGTIQYMAPEVLSGGPYNHASDWWSLGILLFALATGKFPV----PPEPDHC 306

  Fly   345 VMNWRETLIFPPEIP--ISEEAKETIINFCCEAD-RRLGSQRGLEDLKSVPFFRGVDWE-HIRER 405
            :| .|....||.::|  .|......:....|:.. |||   |.||..|...||.|..:: |:.::
Zfish   307 LM-LRRVRSFPYDMPKTFSPSFALLLTELLCKTPARRL---RTLERFKRQTFFHGTPFDSHLLQK 367

  Fly   406 -PAAIPVEVRSIDDTS-------NFDEFP----DVSLEIPSAPIPQ 439
             |..:.:|:::..|..       ..:.||    |..|..|..|..|
Zfish   368 TPMELILELKNRPDRPAKARRGLTLESFPNFDCDFLLSSPCTPAAQ 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trcNP_001262071.1 OmpH 16..>85 CDD:214922 95/371 (26%)
STKc_NDR_like 91..455 CDD:270750 93/365 (25%)
rskrbXP_003200943.1 S_TKc 102..355 CDD:214567 78/303 (26%)
STKc_AGC 108..355 CDD:270693 76/297 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0605
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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