DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trc and LOC100497498

DIOPT Version :9

Sequence 1:NP_001262071.1 Gene:trc / 40165 FlyBaseID:FBgn0003744 Length:463 Species:Drosophila melanogaster
Sequence 2:XP_002938754.3 Gene:LOC100497498 / 100497498 -ID:- Length:1608 Species:Xenopus tropicalis


Alignment Length:455 Identity:180/455 - (39%)
Similarity:257/455 - (56%) Gaps:100/455 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 KQRLAKLE------------AQLKDESLSEA------------QRQEKRLQHAQKETEYL----- 81
            ::||.:||            ..|..|:|.:|            .|::|.:      ||:|     
 Frog     4 ERRLKELEDMILRGPQGPGIGSLSMETLIDALICLCHACNAAPLRRDKNV------TEFLAWAEP 62

  Fly    82 ---RLKRLRLGVEDFEALKVIGRGAFGEVRLVQKKDTGHVYAMKVLRKADMLEKEQVAHVRAERD 143
               ::|::||..:|||.:|||||||||||.:|:.|.:|.::|||:|.|.:||::.:.|..|.|||
 Frog    63 FSSKVKQMRLKRDDFEIVKVIGRGAFGEVAVVKMKGSGKIFAMKILHKWEMLKRAETACFREERD 127

  Fly   144 VLVEADHQWVVKMYYSFQDPVNLYLIMEFLPGGDMMTLLMK-KDTLSEEGTQFYISETALAIDSI 207
            |||:.|.||:..::|:|.|...|||:|::..|||::|||.| :|.|.|:..:||::|..||||||
 Frog   128 VLVKGDTQWIPSLHYAFHDDNYLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSI 192

  Fly   208 HKLGFIHRDIKPDNLLLDARGHLKLSDFGLCTGLKKSHRTDFYRDLSQAKPSDFIGTCASLSCSP 272
            |:|.::||||||||:|:|.:||::|:|||.|..:|..                  ||..|     
 Frog   193 HQLNYVHRDIKPDNVLIDLKGHIRLADFGSCLKMKPD------------------GTVES----- 234

  Fly   273 MDSKRRAESWKRNRRALAYSTVGTPDYIAPEVF--LQTG---YGPACDWWSLGVIMYEMLMGYPP 332
                           ::|   |||||||:||:.  ::.|   ||..||||||||.|||:|.|..|
 Frog   235 ---------------SVA---VGTPDYISPEILQAMEDGKGKYGIECDWWSLGVSMYELLFGETP 281

  Fly   333 FCSDNPQDTYRKVMNWRETLIFPPEI-PISEEAKETIINFCCEADRRLGSQRGLEDLKSVPFFRG 396
            |.:::..:||.|:||..|.|.||.:| .:||:||:.|....|..:.||| :.|::|.|..|||.|
 Frog   282 FYAESLVETYGKIMNHEEHLQFPSDITDVSEKAKDLIQRLICRKEERLG-KGGIDDFKKHPFFNG 345

  Fly   397 VDWEHIRERPAAIP---VEVRSIDDTSNFDEFPDVSLE----IPSAPIPQGGEIAKDWVFINYTY 454
            |||::||.   |||   .||.|..|||||| ..|.||:    :|  |....|..|....|:.:|:
 Frog   346 VDWDNIRN---AIPPYTPEVDSPADTSNFD-VDDESLKNLDTLP--PNNHNGFSAHLLPFVGFTF 404

  Fly   455  454
             Frog   405  404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trcNP_001262071.1 OmpH 16..>85 CDD:214922 13/70 (19%)
STKc_NDR_like 91..455 CDD:270750 164/378 (43%)
LOC100497498XP_002938754.3 PKc_like 6..412 CDD:419665 180/453 (40%)
SbcC <438..909 CDD:223496
KELK 476..554 CDD:406277
C1_MRCKgamma 963..1014 CDD:410416
PH-like 1022..1149 CDD:418428
CNH 1178..1439 CDD:395630
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D759391at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.