DRSC/TRiP Functional Genomics Resources

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Protein Alignment trc and citb

DIOPT Version :10

Sequence 1:NP_001262071.1 Gene:trc / 40165 FlyBaseID:FBgn0003744 Length:463 Species:Drosophila melanogaster
Sequence 2:XP_021334036.1 Gene:citb / 100333880 ZFINID:ZDB-GENE-131030-2 Length:1631 Species:Danio rerio


Alignment Length:177 Identity:44/177 - (24%)
Similarity:77/177 - (43%) Gaps:40/177 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 MSSRTQDADGASIRFSDHTLD-KATKAKVTLENYYS------NLVTQYGERKQR----------- 48
            :|.:.::|..:|::.:.|.|| :..:||..||...:      .::..:.:..||           
Zfish   457 LSLQEREAQISSLQAARHALDSQLQQAKTELEETTAEAEEEITVLRAHRDEIQRKFDALRDSCAV 521

  Fly    49 LAKLEAQLKD--ESLSEAQRQ----EKRLQHAQKETEYLRLKRLRLGVEDFEALK--VIGRGAFG 105
            :..||.||..  :..:|..||    .|:|..|..|.|    :||:| .:|.|.|:  |..|    
Zfish   522 ITDLEEQLTQLTQENAELNRQNFYLSKQLDEATDENE----ERLQL-KQDVERLRREVADR---- 577

  Fly   106 EVRLVQKKDTGHVYAMKVLRKADMLEKEQVAHVRAERDVLVEADHQW 152
            |:.|..:|..     ::.|:....:.:|||..:....|.|:|.:.||
Zfish   578 EMHLNNQKQN-----IETLKTTCTMLEEQVMELETLNDELMEKERQW 619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trcNP_001262071.1 MobB_Trc-like 24..88 CDD:439274 20/86 (23%)
STKc_NDR_like 91..455 CDD:270750 17/64 (27%)
citbXP_021334036.1 SMC_prok_B 64..780 CDD:274008 44/177 (25%)
CRIK 957..1012 CDD:410364
PH-like 1043..1154 CDD:473070
CNH 1188..1484 CDD:470577
Blue background indicates that the domain is not in the aligned region.

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