DRSC/TRiP Functional Genomics Resources

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Protein Alignment trc and rock1

DIOPT Version :10

Sequence 1:NP_001262071.1 Gene:trc / 40165 FlyBaseID:FBgn0003744 Length:463 Species:Drosophila melanogaster
Sequence 2:XP_021334267.1 Gene:rock1 / 100329779 ZFINID:ZDB-GENE-100712-2 Length:1375 Species:Danio rerio


Alignment Length:437 Identity:166/437 - (37%)
Similarity:241/437 - (55%) Gaps:77/437 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 RLAKLEAQLKD-----------ESLS--------EAQRQEKRLQHAQK--ETEYLRLKRLRLGVE 91
            |..|::|.|||           :||.        .|.|:.|.:....|  :....:::.||:..|
Zfish    12 RFEKIDAMLKDPKSEVNTDCLLDSLDALVYDLDFPALRKNKSIDDFLKRYKDTISKIRELRMKAE 76

  Fly    92 DFEALKVIGRGAFGEVRLVQKKDTGHVYAMKVLRKADMLEKEQVAHVRAERDVLVEADHQWVVKM 156
            |:|.:|||||||||||:||:.|.|..|||||:|.|.:|:::...|....|||::..|:..|||::
Zfish    77 DYEVVKVIGRGAFGEVQLVRHKATRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSNWVVQL 141

  Fly   157 YYSFQDPVNLYLIMEFLPGGDMMTLLMKKDTLSEEGTQFYISETALAIDSIHKLGFIHRDIKPDN 221
            :|:|||...||::||::||||::.|:...| :.|:..:||.:|..||:|.||.:||||||:||||
Zfish   142 FYAFQDDRYLYMVMEYMPGGDLVNLMSNYD-VPEKWARFYTAEVVLALDGIHSMGFIHRDVKPDN 205

  Fly   222 LLLDARGHLKLSDFGLCTGLKKSHRTDFYRDLSQAKPSDFIGTCASLSCSPMDSKRRAESWKRNR 286
            :|||..|||||:|||.|..:.|                              |...|.:      
Zfish   206 MLLDKSGHLKLADFGTCMKMNK------------------------------DGMVRCD------ 234

  Fly   287 RALAYSTVGTPDYIAPEVFLQTG----YGPACDWWSLGVIMYEMLMGYPPFCSDNPQDTYRKVMN 347
                 :.|||||||:|||....|    ||..|||||:||.:||||:|..||.:|:...||.|:||
Zfish   235 -----TAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMN 294

  Fly   348 WRETLIFPPEIPISEEAKETIINFCCEADRRLGSQRGLEDLKSVPFFRGVD--WEHIRERPAAIP 410
            .:..|.||.:..||::||..|..|..:.:.||| :.|::::|...||:...  ||:|||..|.:.
Zfish   295 HKNALTFPEDSDISKDAKSLICAFLTDREVRLG-RNGVDEIKRHGFFKNDQWTWENIRETAAPVV 358

  Fly   411 VEVRSIDDTSNFDEFPDVSLEIPSAPIPQ---GGEIAKDWVFINYTY 454
            .|:....||||||:..:...|..:.|||:   |.::.    |:.:||
Zfish   359 PELSCDTDTSNFDDIEEDRGEEETFPIPKAFVGNQLP----FVGFTY 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trcNP_001262071.1 MobB_Trc-like 24..88 CDD:439274 13/60 (22%)
STKc_NDR_like 91..455 CDD:270750 152/373 (41%)
rock1XP_021334267.1 STKc_ROCK1 4..408 CDD:270772 166/437 (38%)
SMC_prok_B 423..>1101 CDD:274008
HR1_ROCK1 493..558 CDD:212029
ROCK_SBD 836..916 CDD:409019
PH_ROCK 1124..1230 CDD:269948
C1_ROCK1 1227..1295 CDD:410424
Blue background indicates that the domain is not in the aligned region.

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