DRSC/TRiP Functional Genomics Resources

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Protein Alignment Deaf1 and Gmeb2

DIOPT Version :9

Sequence 1:NP_001262069.1 Gene:Deaf1 / 40164 FlyBaseID:FBgn0013799 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_113991.2 Gene:Gmeb2 / 83635 RGDID:620481 Length:530 Species:Rattus norvegicus


Alignment Length:387 Identity:77/387 - (19%)
Similarity:142/387 - (36%) Gaps:102/387 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 KTIVIQQQQTQPGGGGGGANNAGTNTTATNTIGLNHDGSGSNNSHDSLATLEHAAGGASGVGGGG 199
            :.:|:....|...|       :|.....|..:..|....|.:.:.|::.| |:||..|:.     
  Rat    12 EVVVVTTPDTAVDG-------SGVEEVKTVLVTTNLAPHGGDLTEDNMET-ENAAAAAAA----- 63

  Fly   200 GGTGGGSSGWSENPSTQHNE-----------------VFQIRCKTTCAEL-YRSKLGSGGRGRCV 246
                      :...|:|..|                 |:.|.|..:.|.| :|..:..|...:||
  Rat    64 ----------AFTASSQLKEAVLVKMAEEGENLEAEIVYPITCGDSRANLIWRKFVCPGINVKCV 118

  Fly   247 KYKDKWHTPSEFEHVCGRGSSKDWKRSIKYGGKSLQSLIDEGTLTPHATNCSCTVCCDDEAGESA 311
            :|.:...:|.||.|:.|:.:.|||||:|:..|..|:.::|.|.|..:..:..|:..|.....:.:
  Rat   119 QYDEHVISPKEFVHLAGKSTLKDWKRAIRMNGIMLRKIMDSGELDFYQHDKVCSNTCRSTKIDLS 183

  Fly   312 SGPVRLFTPYKRRKRNQTDLDMESGPKRKRNTHHSNNNNSNTNNNNTSGSGANNCVDVTAAVAAA 376
            ...|.|.:|                    .:|.:.....:..:.|   ||.|...::........
  Rat   184 GARVSLSSP--------------------TSTEYIPLTPAAADVN---GSPATITIETCEDPGDW 225

  Fly   377 TASVVDENNMFLSEENITSKDEPWAALNDS--LDTSTELVD--QSQMGNTYE------------- 424
            |.::.|:...|            |..|.|:  ||   |::.  |.::..|.:             
  Rat   226 TTTIGDDTFAF------------WRGLKDAGLLD---EVIQEFQQELEETMKGLQQRVQDPPLQL 275

  Fly   425 RETFVVNINDGSSIAVLDTSQSMKNIEHVYCTMVKATNDFKRMLNDMKQSFE---RRIEVLQ 483
            |:..::| |...:..:||..:  |.:....|.|.::...:.|.|..::|..:   ||.:.|:
  Rat   276 RDAVLLN-NIVQNFGMLDLVK--KVLASHKCQMDRSREQYARDLAALEQQCDEHRRRAKELK 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Deaf1NP_001262069.1 SAND 219..291 CDD:128554 26/89 (29%)
zf-MYND 521..557 CDD:280009
Gmeb2NP_113991.2 SAND 90..163 CDD:128554 25/72 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4333
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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