DRSC/TRiP Functional Genomics Resources

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Protein Alignment cyc and Ncoa2

DIOPT Version :9

Sequence 1:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_114010.1 Gene:Ncoa2 / 83724 RGDID:620108 Length:1465 Species:Rattus norvegicus


Alignment Length:426 Identity:104/426 - (24%)
Similarity:178/426 - (41%) Gaps:96/426 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 ENYDEEKSARTSDENRKQNHSEI--------EKRRRDKMNTYINELSSMIPMCFA-------MQR 65
            ||..:...|.|  ..||:...::        |||.|::.|.||.||:.:|   ||       ...
  Rat     6 ENTSDPSRAET--RKRKECPDQLGPSPKRSTEKRNREQENKYIEELAELI---FANFNDIDNFNF 65

  Fly    66 KLDKLTVLRMAVQHLRGIRGSGSLHPFNGSDYRPSFLS-------DQE-LKMIILQASEGFLFVV 122
            |.||..:|:..|:.:|.|:........|..:.:.|.:|       |:: |..::|:|.:||.|||
  Rat    66 KPDKCAILKETVKQIRQIKEQEKAAAANIDEVQKSDVSSTGQGVIDKDALGPMMLEALDGFFFVV 130

  Fly   123 GCDRGRILYVSDSVSSVLNSTQADLLGQSWFDVLHPKDIGKVKEQLSSLEQCPRERLIDAKTMLP 187
            ..: |.:::||::|:..|...|.:|:.:|.:.:||   :|...|.:              |.:||
  Rat   131 NLE-GNVVFVSENVTQYLRYNQEELMNKSVYSILH---VGDHTEFV--------------KNLLP 177

  Fly   188 VKTDVPQSLCRLCPGARRS--FFCRMKLRTASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVI 250
             |:.|........|..|.|  |.|||.::...:::  ||...:..:.            .||..:
  Rat   178 -KSMVNGGSWTGEPPRRNSHTFNCRMLVKPLPDSE--EEGHDNQEAH------------QKYETM 227

  Fly   251 QC--TGYLKSWTPIKDEDQDADSDEQTTNLSCLVAIGRIPPNVRNSTVPASLDNHPNIRHVLFIS 313
            ||  ....||   ||:|.:|..        |||:.:.|..|......:|:|..         |.:
  Rat   228 QCFAVSQPKS---IKEEGEDKQ--------SCLICVARRVPMKERPALPSSES---------FTT 272

  Fly   314 RHSGEGKFLFID---QRATLVIGFLPQEILGTSFYEYFH----NEDIAALMESHKMVMQVPEKVT 371
            |...:||..|:|   .|..:..|:   |.|.....:.||    .|.::.....|..|:: .....
  Rat   273 RQDLQGKITFLDTSTMRDAMKPGW---EDLVRRCIQKFHTQHEGESLSYAKRHHHEVLR-QGLAF 333

  Fly   372 TQVYRFRCKDNSYIQLQSEWRAFKNPWTSEIDYIIA 407
            :|:|||...|.:.:..|::.:..::..|:|...:|:
  Rat   334 SQIYRFSLSDGTLVAAQTKSKLIRSQTTNEPQLVIS 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cycNP_524168.2 HLH 31..84 CDD:278439 20/67 (30%)
PAS 111..212 CDD:279347 30/102 (29%)
PAS 111..173 CDD:214512 19/61 (31%)
PAS_11 311..411 CDD:291273 24/104 (23%)
PAS 311..406 CDD:238075 23/101 (23%)
Ncoa2NP_114010.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..40 9/35 (26%)
HLH 35..88 CDD:197674 19/55 (35%)
PAS 119..215 CDD:279347 33/116 (28%)
PAS 123..213 CDD:238075 29/110 (26%)
PAS_11 268..378 CDD:291273 24/115 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 449..528
NCOA_u2 463..587 CDD:293270
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 547..741
SRC-1 640..709 CDD:285981
LXXLL motif 1 641..645
LXXLL motif 2 690..694
CASP8AP2-binding 691..743
Interaction with ARNTL. /evidence=ECO:0000250|UniProtKB:Q61026 730..1121
DUF4927 731..816 CDD:292896
LXXLL motif 3 745..749
LXXLL motif 4 878..882
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1052..1075
Nuc_rec_co-act 1071..1116 CDD:285967
LLXXLXXXL motif 1079..1087
DUF1518 1281..1338 CDD:284808
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1311..1330
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3561
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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