DRSC/TRiP Functional Genomics Resources

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Protein Alignment cyc and ncoa2

DIOPT Version :10

Sequence 1:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_571852.1 Gene:ncoa2 / 81884 ZFINID:ZDB-GENE-010406-3 Length:1505 Species:Danio rerio


Alignment Length:412 Identity:94/412 - (22%)
Similarity:165/412 - (40%) Gaps:96/412 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 ARTSDENRKQNHSEI---------EKRRRDKMNTYINELSSMIPMCFA-------MQRKLDKLTV 72
            ||:..:.||:..|::         |||.|:..:.||.||:.:|   ||       ...|.||..:
Zfish    12 ARSEAQKRKEGPSDLLGPSPKRSTEKRNREHESKYIEELAELI---FANFNDIDNFNVKPDKCAI 73

  Fly    73 LRMAVQHLRGIRGSGSLHPFNGSDYR--------PSFLSDQELKMIILQASEGFLFVVGCDRGRI 129
            |:..|:.:|.|:........|..:.:        .|.:....|..::|:|.:||.|||..: |.|
Zfish    74 LKETVKQIRQIKEQEKAAAANEDEVQKADVSSTGQSVIDKDALGPMMLEALDGFFFVVNME-GNI 137

  Fly   130 LYVSDSVSSVLNSTQADLLGQSWFDVLHPKDIGKVKEQLSSLEQCPRERLIDAKTMLPVK--TDV 192
            ::||::|:..|...|.:|:..|.:.:||   :|...|.:              |.:||..  ..|
Zfish   138 VFVSENVTQYLRYNQEELMNTSVYSILH---VGDHAEFI--------------KNLLPKSHVNGV 185

  Fly   193 PQSLCRLCPGARR---SFFCRMKLRTASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVIQCTG 254
            |.|    ....||   :|.|||.:.  .:::.:|..|..:.              .||..:||..
Zfish   186 PWS----SENPRRNSHTFNCRMLVN--PHSEAEETQDHEAQ--------------QKYETMQCFA 230

  Fly   255 YLKSWTPIKDEDQDADSDEQTTNLSCLVAIGRIPPNVRNSTVPASLDNHPNIRHVLFISRHSGEG 319
             :.....||:|.:|..        |||:.:.|..|......:|....         |.:|...:|
Zfish   231 -VSEPKSIKEEGEDFQ--------SCLICVARRVPMKERPMLPTQES---------FTTRQDLQG 277

  Fly   320 KFLFIDQ---RATLVIGFLPQEILGTSFYEYFH--NEDIAALMESHKMVMQVPEKVTTQVYRFRC 379
            |...:|.   ||::..|:   |.|.....:.||  |:...:..:.|:..:....:..:.:|||..
Zfish   278 KITSLDTSLLRASMKPGW---EDLVRRCIQRFHLQNDGDISFAKRHQQEVIRHGQAFSPIYRFSL 339

  Fly   380 KDNSYIQLQSEWRAFKNPWTSE 401
            .|.:.:...::.:..::..|:|
Zfish   340 SDGTIVSAHTKSKLVRSSSTNE 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cycNP_524168.2 bHLH_SF 31..92 CDD:469605 21/76 (28%)
PAS 111..173 CDD:214512 20/61 (33%)
PAS_11 311..411 CDD:464214 20/96 (21%)
ncoa2NP_571852.1 basic helix-loop-helix DNA-binding domain 18..86 21/70 (30%)
bHLH-PAS_NCoA2_SRC2 29..92 CDD:381520 18/65 (28%)
PAS 119..176 CDD:214512 21/74 (28%)
PAS A domain 125..184 21/76 (28%)
PAS_11 266..375 CDD:464214 20/108 (19%)
PAS B domain 269..330 14/63 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 392..515
NCOA_u2 460..558 CDD:465223
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 542..562
SRC-1 625..705 CDD:462615
NR Box 630..634
NR Box 686..690
DUF4927 728..803 CDD:465083
NR Box 742..746
Med15 831..>1217 CDD:312941
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 835..871
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 939..962
Nuc_rec_co-act 1061..1105 CDD:462608
LLXXLXXXL motif. /evidence=ECO:0000255 1069..1077
PABP-1234 <1080..1239 CDD:130689
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1246..1265
HAT-like domain 1310..1378
DUF1518 1354..1410 CDD:462174
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1475..1505
Blue background indicates that the domain is not in the aligned region.

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