DRSC/TRiP Functional Genomics Resources

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Protein Alignment cyc and Hif3a

DIOPT Version :10

Sequence 1:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_001375441.1 Gene:Hif3a / 64345 RGDID:70332 Length:664 Species:Rattus norvegicus


Alignment Length:376 Identity:102/376 - (27%)
Similarity:171/376 - (45%) Gaps:75/376 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 RTSDENRKQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQHLRGIR--GSG 87
            |:|.|.||:...:..:.||.:....:.:|:..:|....:...|||.:::|:.:.:||..|  .:|
  Rat     9 RSSTELRKEKSRDAARSRRSQETEVLYQLAHTLPFARGVSAHLDKASIMRLTISYLRMHRLCAAG 73

  Fly    88 SLHPFNGSDYRPSFLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVSSVLNSTQADLLGQSW 152
            ..:.. |.:..|       |....|:|.|||:.|:..: |.:.|:|::||..|..:|.:|:|.|.
  Rat    74 EWNQV-GKEGEP-------LDACYLKALEGFVMVLTAE-GDMAYLSENVSKHLGLSQLELIGHSI 129

  Fly   153 FDVLHPKDIGKVKEQLSSLEQCPRERLIDAKTMLPVKTDVPQSLCRLCPGARRSFFCRMKLRTAS 217
            ||.:||               |.:|.|.||.|..|       ||.                    
  Rat   130 FDFIHP---------------CDQEELQDALTPRP-------SLS-------------------- 152

  Fly   218 NNQIKEESDTSSSSRSSTKRKSRLTTGHK--------YRVIQCTGYLKSWTPIKDEDQDADSDEQ 274
                |::|:.::....|.:.||.||:..:        ::|:.|:|:::::.| ..:...|.|...
  Rat   153 ----KKKSEAATGRHFSLRMKSTLTSRGRTLNLKAATWKVLHCSGHMRAYKP-PAQTSPAGSPRS 212

  Fly   275 TTNLSCLVAIGRIPPNVRNSTVPASLDNHPNIRHVLFISRHSGEGKFLFIDQRATLVIGFLPQEI 339
            ...|.|||.|....|:      ||||:  |.:....|:||||.:.||.:.|:|...|.|:.|.::
  Rat   213 EPPLQCLVLICEAIPH------PASLE--PPLGRGAFLSRHSLDMKFTYCDERIAEVAGYSPDDL 269

  Fly   340 LGTSFYEYFHNEDIAALMESHKMVMQVPEKVTTQVYRFRCKDNSYIQLQSE 390
            :|.|.|||.|..|..|:..|...::...:.||.| |||..:...|:..|::
  Rat   270 IGCSAYEYIHALDSDAVSRSIHTLLSKGQAVTGQ-YRFLARTGGYLWTQTQ 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cycNP_524168.2 bHLH_SF 31..92 CDD:469605 14/62 (23%)
PAS 111..173 CDD:214512 20/61 (33%)
PAS_11 311..411 CDD:464214 29/80 (36%)
Hif3aNP_001375441.1 bHLH-PAS_HIF3a_PASD7 12..74 CDD:381572 14/61 (23%)
PAS 90..145 CDD:214512 24/70 (34%)
PAS_3 251..338 CDD:430001 23/70 (33%)
PHA03247 <360..633 CDD:223021
HIF-1 475..506 CDD:463274
Blue background indicates that the domain is not in the aligned region.

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