DRSC/TRiP Functional Genomics Resources

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Protein Alignment cyc and NPAS3

DIOPT Version :10

Sequence 1:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster
Sequence 2:XP_016877071.1 Gene:NPAS3 / 64067 HGNCID:19311 Length:986 Species:Homo sapiens


Alignment Length:421 Identity:104/421 - (24%)
Similarity:174/421 - (41%) Gaps:107/421 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 RKQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQHL--RGIRGSGSLHPFN 93
            ||:...:..:.||.|.|....||:.::|:..|:..:|||.:::|:.:.:|  |.....|. .|:|
Human    88 RKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGD-PPWN 151

  Fly    94 --------------------------------GSDYR--PSFLS----DQELKMIILQASEGFLF 120
                                            |:..|  ||.|:    :..|...|||:.:||:|
Human   152 LRMEGPPPNTSVKGIQMWKSELCMRKTPCEVIGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVF 216

  Fly   121 VVGCDRGRILYVSDSVSSVLNSTQADLLGQSWFDVLHPKDIGKVKEQLSSLEQCPRERLI----- 180
            .:. ..|:.||:|::||..|..:|.:|.|.|.||.:||.|..::.||| .::..|...|:     
Human   217 ALN-QEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQL-GMKLPPGRGLLSQGTA 279

  Fly   181 -----------DAKTMLPVKTDVPQSLCRLCPGARRSFFCRMKLRTASNNQIKEESDTSSSSRSS 234
                       .::|..||::..| ||........||||.|||                   .:.
Human   280 EDGASSASSSSQSETPEPVESTSP-SLLTTDNTLERSFFIRMK-------------------STL 324

  Fly   235 TKRKSRLTTGHKYRVIQCTGYLKSWTPIKDEDQDADSDEQTTNLSCLVAIGR-IPPNVRNSTVPA 298
            |||...:.:. .|:||..||.|:                    |...::.|| :|..:....|.|
Human   325 TKRGVHIKSS-GYKVIHITGRLR--------------------LRVSLSHGRTVPSQIMGLVVVA 368

  Fly   299 SLDNHPNIRHV-----LFISRHSGEGKFLFIDQRATLVIGFLPQEILGTSFYEYFHNEDIAALME 358
            .....|.|..|     :|::|.:.:...::.:.|.:..:...|.:|:|...|.:.|.||:..:..
Human   369 HALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRH 433

  Fly   359 SHKMVMQVPEKVTTQVYRFRCKDNSYIQLQS 389
            ||..::...:.| |:.||:..|:..||.:||
Human   434 SHLDLLNKGQCV-TKYYRWMQKNGGYIWIQS 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cycNP_524168.2 bHLH_SF 31..92 CDD:469605 17/62 (27%)
PAS 111..173 CDD:214512 25/61 (41%)
PAS_11 311..411 CDD:464214 21/79 (27%)
NPAS3XP_016877071.1 bHLH-PAS_NPAS3_PASD6 84..160 CDD:381575 19/72 (26%)
PAS 205..263 CDD:214512 23/58 (40%)
KinE 207..>466 CDD:444511 79/301 (26%)
PAS_3 396..483 CDD:430001 19/69 (28%)
MSCRAMM_ClfA <489..>648 CDD:468110
Blue background indicates that the domain is not in the aligned region.

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