DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cyc and ncoa3

DIOPT Version :9

Sequence 1:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster
Sequence 2:XP_021335474.1 Gene:ncoa3 / 564519 ZFINID:ZDB-GENE-051107-8 Length:1504 Species:Danio rerio


Alignment Length:397 Identity:96/397 - (24%)
Similarity:162/397 - (40%) Gaps:81/397 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 SDENRKQNHSE-----IEKRRRDKMNTYINELSSMIPMCF----AMQRKLDKLTVLRMAVQHLRG 82
            ||..||.:..:     .:||||::.:.||.||:.:|....    :...|.||..:|:..|:.:|.
Zfish    14 SDRKRKLSTCDTPGQGCDKRRREQESKYIEELAELISANLSDIDSFNVKPDKCAILKETVRQIRQ 78

  Fly    83 IR-------GSGSLHPFNGSDYRPSFLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVSSVL 140
            |:       |...:...:.|......:....|..::|||.:||||||..: |.|::|||:|:..|
Zfish    79 IKEQGKSSCGDDDVQKADVSSTGQGVIDKDHLGPLLLQALDGFLFVVSRE-GSIVFVSDNVTQYL 142

  Fly   141 NSTQADLLGQSWFDVLHPKDIGKVKEQLSSLEQCPRERLIDAKTMLPVKTDVPQSLCRLCPGARR 205
            ...|.:|:..|.:::||.:|               ||.|   ...|| |::.|.|:......:|:
Zfish   143 QYKQEELINTSIYNILHEED---------------REEL---HKNLP-KSNGPNSVSWGGDSSRQ 188

  Fly   206 ---SFFCRMKLRTASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVIQCTGYLKSWTPIKDEDQ 267
               :|.|||.::........||.                ..|.:|..:||.. |.....:.:|.:
Zfish   189 KSHTFNCRMLVKFGHGGPGGEEG----------------AGGPRYETMQCFA-LTQPKAMMEEGE 236

  Fly   268 DADSDEQTTNLSCLVAIGRIPPNVRNSTVPASLDNHPNIRHVLFISRHSGEGKFLFIDQRATLVI 332
            |..        ||::.:.|     |.:.|.         |...|.:||...||.:.|:|::.|..
Zfish   237 DLQ--------SCMICVAR-----RVTAVE---------RTERFSTRHELSGKLIEIEQQSLLHT 279

  Fly   333 GFLP--QEILGTSFYEYFH-NEDIAALMESHKMVMQVPEKVTTQVYRFRCKDNSYIQLQSEWRAF 394
            ...|  ::::......:.| :|......:.|.....|..:..|..|||...|.:.:..|:.....
Zfish   280 TMRPGWEDLVRRCMQMFLHRSEGQPWSYKRHYHEAYVHGRAETPPYRFSLSDGTPVTAQTRSELC 344

  Fly   395 KNPWTSE 401
            :||.||:
Zfish   345 RNPVTSD 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cycNP_524168.2 HLH 31..84 CDD:278439 17/61 (28%)
PAS 111..212 CDD:279347 34/103 (33%)
PAS 111..173 CDD:214512 22/61 (36%)
PAS_11 311..411 CDD:291273 23/94 (24%)
PAS 311..406 CDD:238075 23/94 (24%)
ncoa3XP_021335474.1 HLH 32..85 CDD:197674 16/52 (31%)
PAS 113..170 CDD:214512 25/75 (33%)
PAS_3 256..367 CDD:330807 23/96 (24%)
NCOA_u2 490..617 CDD:318802
SRC-1 663..773 CDD:312390
DUF4927 795..880 CDD:318508
Nuc_rec_co-act 1094..1141 CDD:312376
DUF1518 1348..1406 CDD:311422
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3561
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

Return to query results.
Submit another query.