DRSC/TRiP Functional Genomics Resources

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Protein Alignment cyc and epas1b

DIOPT Version :10

Sequence 1:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_001034895.3 Gene:epas1b / 555192 ZFINID:ZDB-GENE-060607-11 Length:834 Species:Danio rerio


Alignment Length:402 Identity:101/402 - (25%)
Similarity:179/402 - (44%) Gaps:75/402 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 EEKSARTSDENRKQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQHL--RG 82
            |::..|.|.|.||:...:..:.||.|......||:..:|:..::...|||.:::|:|:..|  |.
Zfish     4 EKEKKRCSSERRKEKSRDAARCRRSKETEVFYELAHHLPLPHSISSHLDKASIMRLAISFLRTRK 68

  Fly    83 IRGSGSLHPFNGSDYRPSFLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVSSVLNSTQADL 147
            :..||...|...:|      :|:.:....|::..||:.||..| |.::::|::::..:..||.:|
Zfish    69 LVNSGYNTPTEMTD------ADRLMDSWYLKSLGGFITVVTSD-GDMIFLSENINKFMGLTQVEL 126

  Fly   148 LGQSWFDVLHPKDIGKVKEQLSSLEQCPRERLIDAKTMLPVKTDVPQSLCRLCPGARRSFFCRMK 212
            .|.|.||..||.|..:::|.||                  :|..:.:....|  ...|.||.|||
Zfish   127 TGHSIFDFTHPCDHEEIRENLS------------------LKAGIGKKGKEL--STERDFFMRMK 171

  Fly   213 LRTASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVIQCTGYLK--SWTP------IKDEDQDA 269
            ....:..:.......|                  ::|:.|||:||  :..|      .|:..   
Zfish   172 CTVTNRGRTVNLKSAS------------------WKVLHCTGHLKVCNGCPARVLCGFKEPP--- 215

  Fly   270 DSDEQTTNLSCLVAIGRIPPNVRNSTVPASLDNHPNIRHVLFISRHSGEGKFLFIDQRATLVIGF 334
                    |:|:|.:  ..|.|..|.:...||:.      .|:||||.:.|:.:.|:|.|.::|:
Zfish   216 --------LTCVVMM--CEPIVHPSNIDTPLDSK------TFLSRHSMDMKYTYCDERVTELMGY 264

  Fly   335 LPQEILGTSFYEYFHNEDIAALMESHKMVMQVPEKVTTQVYRFRCKDNSYIQLQSEWRAFKNPWT 399
            .|:::||.|.||::|..|...:.:||:.:....:.|:.| ||...|:..|:.:::......|...
Zfish   265 NPEDLLGRSAYEFYHALDAENVTKSHQNLCTKGQAVSGQ-YRMLAKNGGYVWVETRGTVIYNSRN 328

  Fly   400 SEIDYIIAKNSV 411
            |:...|:..|.|
Zfish   329 SQPQCIVCVNYV 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cycNP_524168.2 bHLH_SF 31..92 CDD:469605 17/62 (27%)
PAS 111..173 CDD:214512 21/61 (34%)
PAS_11 311..411 CDD:464214 30/99 (30%)
epas1bNP_001034895.3 None

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