DRSC/TRiP Functional Genomics Resources

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Protein Alignment cyc and Hif3a

DIOPT Version :10

Sequence 1:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_001156422.1 Gene:Hif3a / 53417 MGIID:1859778 Length:664 Species:Mus musculus


Alignment Length:371 Identity:100/371 - (26%)
Similarity:167/371 - (45%) Gaps:65/371 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 RTSDENRKQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQHLRGIRGSGSL 89
            |::.|.||:...:..:.||.:....:.:|:..:|....:...|||.:::|:.:.:||       :
Mouse     9 RSNTELRKEKSRDAARSRRSQETEVLYQLAHTLPFARGVSAHLDKASIMRLTISYLR-------M 66

  Fly    90 HPF-NGSDYRPSFLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVSSVLNSTQADLLGQSWF 153
            |.. ...::.......:.|....|:|.|||:.|:..: |.:.|:|::||..|..:|.:|:|.|.|
Mouse    67 HRLCAAGEWNQVEKGGEPLDACYLKALEGFVMVLTAE-GDMAYLSENVSKHLGLSQLELIGHSIF 130

  Fly   154 DVLHPKDIGKVKEQLSSLEQCPRERLIDAKTMLP----VKTDVPQSLCRLCPGARRSFFCRMKLR 214
            |.:||               |.:|.|.||.|..|    .|.:.|         ..|.|..|||  
Mouse   131 DFIHP---------------CDQEELQDALTPRPNLSKKKLEAP---------TERHFSLRMK-- 169

  Fly   215 TASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVIQCTGYLKSWTPIKDEDQDADSDEQTTNLS 279
                        ::.:||..|......|    ::|:.|:|:::::.| ..:...|.|......|.
Mouse   170 ------------STLTSRGRTLNLKAAT----WKVLHCSGHMRAYKP-PAQTSPAGSPRSEPPLQ 217

  Fly   280 CLVAIGRIPPNVRNSTVPASLDNHPNIRHVLFISRHSGEGKFLFIDQRATLVIGFLPQEILGTSF 344
            |||.|....|:      ||||:  |.:....|:||||.:.||.:.|:|...|.|:.|.:::|.|.
Mouse   218 CLVLICEAIPH------PASLE--PPLGRGAFLSRHSLDMKFTYCDERIAEVAGYSPDDLIGCSA 274

  Fly   345 YEYFHNEDIAALMESHKMVMQVPEKVTTQVYRFRCKDNSYIQLQSE 390
            |||.|..|..|:..|...::...:.||.| |||..:...|:..|::
Mouse   275 YEYIHALDSDAVSRSIHTLLSKGQAVTGQ-YRFLARTGGYLWTQTQ 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cycNP_524168.2 bHLH_SF 31..92 CDD:469605 13/60 (22%)
PAS 111..173 CDD:214512 20/61 (33%)
PAS_11 311..411 CDD:464214 29/80 (36%)
Hif3aNP_001156422.1 bHLH-PAS_HIF3a_PASD7 12..74 CDD:381572 14/68 (21%)
PAS 90..145 CDD:214512 24/70 (34%)
PAS_3 251..338 CDD:430001 23/70 (33%)
HIF-1 475..506 CDD:463274
Blue background indicates that the domain is not in the aligned region.

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