Protein Alignment cyc and ss

DIOPT Version :10

• Sequence 1: NP_524168.2
• Gene: cyc / 40162
• FlyBaseID: FBgn0023094
• Length: 413
• Species: Drosophila melanogaster
• Sequence 2: NP_001163629.2
• Gene: ss / 41988
• FlyBaseID: FBgn0003513
• Length: 1015
• Species: Drosophila melanogaster
• Alignment Length: 393
• Identity: 92/393 - (23%)
• Similarity: 170/393 - (43%)
• Gaps: 77/393 - (19%)

  Fly    32 KQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQHLR-----------GIRG 85
            |.|.|   ||.|:::|..::.|:|::|....:..|||:|::||::|.:||           ....
  Fly    30 KSNPS---KRHRERLNAELDLLASLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQVVMHKDKED 91

  Fly    86 SGSLHPFNGSD-YRPSFLSDQELKMI----ILQASEGFLFVVGCDRGRILYVSDSVSSVLNSTQA 145
            :|.|...:..| ||...|...|..::    .|||..|||.::.|: |.:.:.:.|:.|.|...|:
  Fly    92 NGVLPHIHAHDGYRTRELGAFEHGLLDGDMFLQALNGFLMILTCE-GEVFFATHSIESYLGFHQS 155

  Fly   146 DLLGQSWFDVLHPKDIGKVKEQLSSLEQCPRERLIDAKTMLPVKTDVPQSLCRLCPGARRSFFCR 210
            |::.||.::::|.:|..:::.||......|    .|..:|...:|..|.....|    .|||..|
  Fly   156 DIVHQSVYELVHSEDREELQRQLLWNSFLP----ADMSSMQLAETLAPDKALYL----ERSFTVR 212

  Fly   211 MKLRTASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVIQCTGYLKSWTPIKDEDQDADSDEQT 275
            .:...         .:||...|...:.:.::..|                      |:..::|..
  Fly   213 FRCLL---------DNTSGFLRLDIRGRIKVLHG----------------------QNRKTEEPP 246

  Fly   276 TNL-SCLVAIGRIPPNVRNSTVPASLDNHPNIRHVLFISRHSGEGKFLFIDQRATLVIGFLPQEI 339
            ..| :.....|           |.||...|: :..:|.|:|..:...:.:|||...::|:...|:
  Fly   247 LALFAYCTPFG-----------PPSLLEIPH-KENMFKSKHKLDFSLVSMDQRGKHILGYADAEL 299

  Fly   340 LGTSFYEYFHNEDIAALMESHKMVMQVPEKVTTQVYRFRCKDNSYIQLQSEWR-AFKNPWTSEID 403
            :....|:..|.:|:|.:..:|:.:::....... .||::.||..:..||:..| .:||   |:.|
  Fly   300 VNMGGYDLVHYDDLAYVASAHQELLKTGASGMI-AYRYQKKDGEWQWLQTSSRLVYKN---SKPD 360

  Fly   404 YII 406
            ::|
  Fly   361 FVI 363

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cyc	NP_524168.2	bHLH_SF	31..92	CDD:469605	21/70 (30%)
		PAS	111..173	CDD:214512	19/61 (31%)
		PAS_11	311..411	CDD:464214	25/97 (26%)
ss	NP_001163629.2	bHLH-PAS_spineless_like	24..87	CDD:381573	19/59 (32%)
		PAS	123..178	CDD:214512	17/55 (31%)
		PAS_3	282..366	CDD:430001	22/86 (26%)