DRSC/TRiP Functional Genomics Resources

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Protein Alignment cyc and sim

DIOPT Version :10

Sequence 1:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_524340.2 Gene:sim / 41612 FlyBaseID:FBgn0004666 Length:688 Species:Drosophila melanogaster


Alignment Length:398 Identity:111/398 - (27%)
Similarity:188/398 - (47%) Gaps:62/398 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 KQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQHL--RGIRGSGSLHPFNG 94
            |:......:.||:|.||...||:.::|:..|:..:|||.:|:|:...:|  |.:...|....:..
  Fly    26 KEKSKNAARTRREKENTEFCELAKLLPLPAAITSQLDKASVIRLTTSYLKMRQVFPDGLGEAWGS 90

  Fly    95 SDYRPSFLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVSSVLNSTQADLLGQSWFDVLHPK 159
            |.......:.:||...:||..:||:|||..| |:|:|:|::.|..|..:|.:|.|.|.|:.:|..
  Fly    91 SPAMQRGATIKELGSHLLQTLDGFIFVVAPD-GKIMYISETASVHLGLSQVELTGNSIFEYIHNY 154

  Fly   160 DIGKVKEQLS---SLEQCPRERLIDAKTMLPVKTDVPQSLCRLCPGA------------RRSFFC 209
            |..::...||   .:.|.|.     |:|..|:.:  |..:..  |.|            .::||.
  Fly   155 DQDEMNAILSLHPHINQHPL-----AQTHTPIGS--PNGVQH--PSAYDHDRGSHTIEIEKTFFL 210

  Fly   210 RMKLRTASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVIQCTGYLKSWT-PIKDEDQDADSDE 273
            |||...|                   ||.:.|||. .::||.|:||||:.. |.:.:.|.:    
  Fly   211 RMKCVLA-------------------KRNAGLTTS-GFKVIHCSGYLKARIYPDRGDGQGS---- 251

  Fly   274 QTTNLSCLVAIGRIPPNVRNSTVPASLDNHPNIRHVLFISRHSGEGKFLFIDQRATLVIGFLPQE 338
            ...||. |||:|.        ::|:|......:...:|:.|...:.|.:|.|.|.:.:.|:.||:
  Fly   252 LIQNLG-LVAVGH--------SLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGYEPQD 307

  Fly   339 ILGTSFYEYFHNEDIAALMESHKMVMQVPEKVTTQVYRFRCKDNSYIQLQSEWRAFKNPWTSEID 403
            ::..:.|:|.|..||.|:..||:::: ...:|||:.|||..|...::.:||......|..:|...
  Fly   308 LIEKTLYQYIHAADIMAMRCSHQILL-YKGQVTTKYYRFLTKGGGWVWVQSYATLVHNSRSSREV 371

  Fly   404 YIIAKNSV 411
            :|::.|.|
  Fly   372 FIVSVNYV 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cycNP_524168.2 bHLH_SF 31..92 CDD:469605 18/61 (30%)
PAS 111..173 CDD:214512 23/64 (36%)
PAS_11 311..411 CDD:464214 30/99 (30%)
simNP_524340.2 bHLH-PAS_dSIM_like 25..86 CDD:381583 18/59 (31%)
PAS 102..215 CDD:395786 38/122 (31%)
PAS_3 291..377 CDD:430001 26/86 (30%)

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