DRSC/TRiP Functional Genomics Resources

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Protein Alignment cyc and hif1al

DIOPT Version :10

Sequence 1:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster
Sequence 2:XP_005157629.2 Gene:hif1al / 393376 ZFINID:ZDB-GENE-040426-1315 Length:619 Species:Danio rerio


Alignment Length:383 Identity:91/383 - (23%)
Similarity:170/383 - (44%) Gaps:64/383 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 ENRKQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQHLRGIRGSGSLHPFN 93
            |.||....:..:.||.:......||:..:|:...:...|||..::|:.:.:||..|...|     
Zfish     5 EQRKVRSRDAARCRRSQETEVFYELAHSLPLPRRIASHLDKAAIMRVTLSYLRMNRLIQS----- 64

  Fly    94 GSDYRPSFLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVSSVLNSTQADLLGQSWFDVLHP 158
            ||....:..|:........||..||:.|: .:.|.::::|:|||..:..||.:|||||.::.:||
Zfish    65 GSTKSQTEKSETPTDGFYQQALAGFILVM-TEEGDMVFLSESVSKYIGITQLELLGQSVYEFVHP 128

  Fly   159 KDIGKVKEQLSSLEQCPRERLIDAKTMLPVKTDVPQSLCRLCPGARRSFFCRMKLRTASNNQIKE 223
            .|..::::.|::     |..:...|||                  ..:||.|||           
Zfish   129 CDQEELRDILAT-----RPGVSKKKTM------------------EHNFFLRMK----------- 159

  Fly   224 ESDTSSSSRSSTKRKSRLTTGHKYRVIQCTGYLKSWTPIKDEDQDADSDEQTTNLSCLVAIGRIP 288
                  |:.:.|.|...:.:. .::|:.|||:::   |...:|:::.|......|.|       .
Zfish   160 ------STLTHTGRTVNIKSA-TWKVLHCTGHMQ---PFSGDDENSPSAGSFLTLLC-------E 207

  Fly   289 PNVRNSTVPASLDNHPNIRHVLFISRHSGEGKFLFIDQRATLVIGFLPQEILGTSFYEYFHNEDI 353
            |....|:|...||:.      .|::||:.:..:...|.|.|.::|:.|.:::|.|.:|:||..|.
Zfish   208 PIPHPSSVEFPLDSS------TFLTRHNLDLTYTQCDGRVTELVGYQPDDLIGRSAFEFFHALDF 266

  Fly   354 AALMESHKMVMQVPEKVTTQVYRFRCKDNSYIQLQSEWRAFKNPWTSEIDYIIAKNSV 411
            ..:..|..::....:..|.| |||..|:..::..:::.....|..||:.:.::..|.:
Zfish   267 DHVSRSLHILFSKGQVCTGQ-YRFLAKNGGFVWTETQATVLYNSRTSQPEAVVCLNFI 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cycNP_524168.2 bHLH_SF 31..92 CDD:469605 15/60 (25%)
PAS 111..173 CDD:214512 21/61 (34%)
PAS_11 311..411 CDD:464214 25/99 (25%)
hif1alXP_005157629.2 bHLH-PAS_HIF3a_PASD7 4..66 CDD:381572 16/65 (25%)
PAS 84..140 CDD:214512 21/56 (38%)
PAS_11 222..325 CDD:464214 25/109 (23%)
HIF-1 474..503 CDD:463274
Blue background indicates that the domain is not in the aligned region.

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