Protein Alignment cyc and clockb

DIOPT Version :9

• Sequence 1: NP_524168.2
• Gene: cyc / 40162
• FlyBaseID: FBgn0023094
• Length: 413
• Species: Drosophila melanogaster
• Sequence 2: NP_840080.2
• Gene: clockb / 352927
• ZFINID: ZDB-GENE-030408-2
• Length: 820
• Species: Danio rerio
• Alignment Length: 421
• Identity: 120/421 - (28%)
• Similarity: 191/421 - (45%)
• Gaps: 91/421 - (21%)

  Fly    10 MEEIEDENYDEEKSARTSDENRKQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLR 74
            |||      ||:..|:....|:.      ||:|||:.|..|.||.:|:|   ...||:||.|:|:
Zfish    16 MEE------DEKDKAKRVSRNKS------EKKRRDQFNVLIKELGTMLP---GNTRKMDKSTILQ 65

  Fly    75 MAVQHLRGIRGSGSLHPFNG--SDYRPSFLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVS 137
            .::.:||..:.:.:....:.  .|::|.|||::|...::|:|.:||..|:..| |.|:|:|:||:
Zfish    66 KSIDYLRKNKENAAQSESSDIKQDWKPPFLSNEEFSQLMLEALDGFFLVMLTD-GYIIYISESVT 129

  Fly   138 SVLNSTQADLLGQSWFDVLHPKDIGKVKEQLSS---LEQCPRERLIDAKTMLPVKTDVPQSLCRL 199
            |:|....:||:.|:..:.|...|.|:|.:.|||   :|....:.|.....|
Zfish   130 SLLEHLPSDLMDQNLLNFLPVVDHGEVYKALSSQPDIENLNSDYLKSKNQM-------------- 180

  Fly   200 CPGARRSFFCRMKLRTASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVIQCTGYLKSWT--PI 262
                  .|.|.|                   .|.|...|....    |..::..|..||..  |.
Zfish   181 ------EFCCHM-------------------LRGSVDPKKPPV----YEYVKFIGNFKSLVNMPQ 216

  Fly   263 KDED----------QDADSDEQTTNLSCLVAIGRI--PPNVRNSTVPASLDNHPNIRHVLFISRH 315
            |..:          |.|..|:     .|.:|..|:  |..::.    ..:...||..   |.|||
Zfish   217 KTRNGLEGILQHSLQPAFDDQ-----LCFIATVRLAKPQFIKE----MCMVEEPNEE---FTSRH 269

  Fly   316 SGEGKFLFIDQRATLVIGFLPQEILGTSFYEYFHNEDIAALMESHKMVMQVPEKVTTQVYRFRCK 380
            |.|.|||.:|.||..:||::|.|:||||.|:|:|.:|:.:|.:.|:.:||. .|..:..|||..|
Zfish   270 SLEWKFLLLDHRAPPIIGYMPFEVLGTSGYDYYHVDDLHSLAKCHEHLMQF-GKGKSCYYRFLTK 333

  Fly   381 DNSYIQLQSEWRAFKNPWTSEIDYIIAKNSV 411
            ...:|.||:.:....:.|.|..::|:..::|
Zfish   334 GQQWIWLQTNYYITYHQWNSRPEFIVCTHTV 364

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cyc	NP_524168.2	HLH	31..84	CDD:278439	19/52 (37%)
		PAS	111..212	CDD:279347	29/103 (28%)
		PAS	111..173	CDD:214512	24/64 (38%)
		PAS_11	311..411	CDD:291273	39/99 (39%)
		PAS	311..406	CDD:238075	38/94 (40%)
clockb	NP_840080.2	HLH	22..76	CDD:238036	21/62 (34%)
		PAS	99..160	CDD:214512	22/61 (36%)
		PAS_11	263..366	CDD:291273	40/106 (38%)
		PAS	264..362	CDD:238075	39/101 (39%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3561
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	2.810