DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cyc and clockb

DIOPT Version :10

Sequence 1:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_840080.3 Gene:clockb / 352927 ZFINID:ZDB-GENE-030408-2 Length:821 Species:Danio rerio


Alignment Length:421 Identity:120/421 - (28%)
Similarity:191/421 - (45%) Gaps:91/421 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 MEEIEDENYDEEKSARTSDENRKQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLR 74
            |||      ||:..|:....|:.      ||:|||:.|..|.||.:|:|   ...||:||.|:|:
Zfish    16 MEE------DEKDKAKRVSRNKS------EKKRRDQFNVLIKELGTMLP---GNTRKMDKSTILQ 65

  Fly    75 MAVQHLRGIRGSGSLHPFNG--SDYRPSFLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVS 137
            .::.:||..:.:.:....:.  .|::|.|||::|...::|:|.:||..|:..| |.|:|:|:||:
Zfish    66 KSIDYLRKNKENAAQSESSDIKQDWKPPFLSNEEFSQLMLEALDGFFLVMLTD-GYIIYISESVT 129

  Fly   138 SVLNSTQADLLGQSWFDVLHPKDIGKVKEQLSS---LEQCPRERLIDAKTMLPVKTDVPQSLCRL 199
            |:|....:||:.|:..:.|...|.|:|.:.|||   :|....:.|.....|              
Zfish   130 SLLEHLPSDLMDQNLLNFLPVVDHGEVYKALSSQPDIENLNSDYLKSKNQM-------------- 180

  Fly   200 CPGARRSFFCRMKLRTASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVIQCTGYLKSWT--PI 262
                  .|.|.|                   .|.|...|....    |..::..|..||..  |.
Zfish   181 ------EFCCHM-------------------LRGSVDPKKPPV----YEYVKFIGNFKSLVNMPQ 216

  Fly   263 KDED----------QDADSDEQTTNLSCLVAIGRI--PPNVRNSTVPASLDNHPNIRHVLFISRH 315
            |..:          |.|..|:     .|.:|..|:  |..::.    ..:...||..   |.|||
Zfish   217 KTRNGLEGILQHSLQPAFDDQ-----LCFIATVRLAKPQFIKE----MCMVEEPNEE---FTSRH 269

  Fly   316 SGEGKFLFIDQRATLVIGFLPQEILGTSFYEYFHNEDIAALMESHKMVMQVPEKVTTQVYRFRCK 380
            |.|.|||.:|.||..:||::|.|:||||.|:|:|.:|:.:|.:.|:.:||. .|..:..|||..|
Zfish   270 SLEWKFLLLDHRAPPIIGYMPFEVLGTSGYDYYHVDDLHSLAKCHEHLMQF-GKGKSCYYRFLTK 333

  Fly   381 DNSYIQLQSEWRAFKNPWTSEIDYIIAKNSV 411
            ...:|.||:.:....:.|.|..::|:..::|
Zfish   334 GQQWIWLQTNYYITYHQWNSRPEFIVCTHTV 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cycNP_524168.2 bHLH_SF 31..92 CDD:469605 19/60 (32%)
PAS 111..173 CDD:214512 24/64 (38%)
PAS_11 311..411 CDD:464214 39/99 (39%)
clockbNP_840080.3 None

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