DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cyc and Met

DIOPT Version :9

Sequence 1:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_001285132.1 Gene:Met / 32114 FlyBaseID:FBgn0002723 Length:716 Species:Drosophila melanogaster


Alignment Length:472 Identity:110/472 - (23%)
Similarity:178/472 - (37%) Gaps:120/472 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 SARTSD-ENRKQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQHLR----- 81
            |..:|| .|.::..:..||:||||:|..|.||::|:|......|:|||..|||.|...||     
  Fly    28 SGSSSDPANGREARNLAEKQRRDKLNASIQELATMVPHAAESSRRLDKTAVLRFATHGLRLQYVF 92

  Fly    82 -----------GIRGSG-SLHPFNGSDYRPSF-LSDQELKMIILQASEGFLFVVGCDRGRILYVS 133
                       |::|:| |..|. |....||. |:|     .::|..:.....:.|. |:|:.||
  Fly    93 GKSASRRRKKTGLKGTGMSASPV-GDLPNPSLHLTD-----TLMQLLDCCFLTLTCS-GQIVLVS 150

  Fly   134 DSVSSVLNSTQADLLGQSWFDVLHPKDIGKVKEQL------------------------------ 168
            .||..:|...|:||.||:...:.||.|...:::||                              
  Fly   151 TSVEQLLGHCQSDLYGQNLLQITHPDDQDLLRQQLIPRDIETLFYQHQHHQQQGHNPQQHSTSTS 215

  Fly   169 -----SSLEQCPRE----RLIDAKTMLPVKTDVPQSLCRLCPGARRSFFCRMKLRTASNN-QIKE 223
                 |.||:...|    ||...:.......|.|.:  |..|..||    ...|.|..:. ::..
  Fly   216 ASTSGSDLEEEEMETEEHRLGRQQGEADDDEDHPYN--RRTPSPRR----MAHLATIDDRLRMDR 274

  Fly   224 ESDTSSSSRSSTKRKSRLTTGHKYRV----------IQCTGYLKSWTPIKDE------------- 265
            ...|...:|:||:.::   |.|..||          ...||...:..||..:             
  Fly   275 RCFTVRLARASTRAEA---TRHYERVKIDGCFRRSDSSLTGGAAANYPIVSQLIRRSRNNNMLAA 336

  Fly   266 -------------DQDADSDEQTTNLS----CLVAIGRI-----PPNVRNSTVPASLDNHPNIRH 308
                         ..||.:......:|    .|||:.|:     ||.....||..::...|....
  Fly   337 AAAVAAEAATVPPQHDAIAQAALHGISGNDIVLVAMARVLREERPPEETEGTVGLTIYRQPEPYQ 401

  Fly   309 VLFISRHSGEGKFLFIDQRATLVIGFLPQEILGTSFYEYFHNEDIAALMESHKMVMQVPEKVTTQ 373
            :.:.:||..:|..:..|||..||.|::..|:...|.:.:.|.:|:..::.:.:.:..........
  Fly   402 LEYHTRHLIDGSIIDCDQRIGLVAGYMKDEVRNLSPFCFMHLDDVRWVIVALRQMYDCNSDYGES 466

  Fly   374 VYRFRCKDNSYIQLQSE 390
            .||...::..:|.|.::
  Fly   467 CYRLLSRNGRFIYLHTK 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cycNP_524168.2 HLH 31..84 CDD:278439 23/68 (34%)
PAS 111..212 CDD:279347 31/139 (22%)
PAS 111..173 CDD:214512 21/96 (22%)
PAS_11 311..411 CDD:291273 17/80 (21%)
PAS 311..406 CDD:238075 17/80 (21%)
MetNP_001285132.1 HLH 38..87 CDD:238036 20/48 (42%)
PAS 137..>186 CDD:238075 17/49 (35%)
PAS_11 403..510 CDD:291273 17/81 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3561
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23042
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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