Protein Alignment cyc and Npas2

DIOPT Version :9

• Sequence 1: NP_524168.2
• Gene: cyc / 40162
• FlyBaseID: FBgn0023094
• Length: 413
• Species: Drosophila melanogaster
• Sequence 2: XP_038939510.1
• Gene: Npas2 / 316351
• RGDID: 1309681
• Length: 855
• Species: Rattus norvegicus
• Alignment Length: 434
• Identity: 131/434 - (30%)
• Similarity: 195/434 - (44%)
• Gaps: 83/434 - (19%)

  Fly    15 DENYDEEKSARTSDENRKQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQH 79
            ||  ||:..|:.:..|:.      ||:|||:.|..|.|||||:|   ...|||||.|||...:
  Rat     2 DE--DEKDRAKRASRNKS------EKKRRDQFNVLIKELSSMLP---GNTRKLDKTTVLEKVI-- 53

  Fly    80 LRGIRGSGSLHPFN-----------GSDYRPSFLSDQELKMIILQASEGFLFVVGCDRGRILYVS 133
                   |.|...|           ..|::|||||::|...::|:|.:||:.||..| |.|:|||
  Rat    54 -------GFLQKHNEVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFVIVVTTD-GSIIYVS 110

  Fly   134 DSVSSVLNSTQADLLGQSWFDVLHPKDIGKVKEQLSSLEQCPRERLIDAKTMLPV---------- 188
            ||::.:|....                 |..:|.:..|.:....||.....:.||
  Rat   111 DSITPLLGHLP-----------------GTEEESMKGLHRSRTLRLCLRSEVHPVERASFSLYFL 158

  Fly   189 -KTDV-PQSLCRLCPGARRSFFCRM----KLRTASNNQ--IKEESDTS---SSSRSSTKRKSRLT 242
             ::|| .|:|....|....|...::    .|.|.|.:.  :|.::|..   ...|.|...|...|
  Rat   159 LQSDVMDQNLLNFLPEQEHSEVYKILSSHMLVTDSPSPEFLKSDNDLEFYCHLLRGSLNPKEFPT 223

  Fly   243 TGHKYRVIQCTGYLKSWTPIKDEDQDADSDEQTTNLSCLVAIGR---IPPNVRNSTVPASLDNHP 304
                |..|:..|..:|:..:  .....:..:.|.:..|.|.:|:   ....||.:| |..|....
  Rat   224 ----YEYIKFVGNFRSYNNV--PSPSCNGFDNTLSRPCRVPLGKEVCFIATVRLAT-PQFLKEMC 281

  Fly   305 NIRHVL--FISRHSGEGKFLFIDQRATLVIGFLPQEILGTSFYEYFHNEDIAALMESHKMVMQVP 367
            .....|  |.||||.|.||||:|.||..:||:||.|:||||.|:|:|.:|:..|...|:.:||.
  Rat   282 VADEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCHQHLMQF- 345

  Fly   368 EKVTTQVYRFRCKDNSYIQLQSEWRAFKNPWTSEIDYIIAKNSV 411
            .|..:..|||..|...:|.||:.:....:.|.|:.::|:..:||
  Rat   346 GKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSV 389

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
cyc	NP_524168.2	HLH	31..84	CDD:278439	21/52 (40%)
		PAS	111..212	CDD:279347	28/116 (24%)
		PAS	111..173	CDD:214512	18/61 (30%)
		PAS_11	311..411	CDD:291273	41/99 (41%)
		PAS	311..406	CDD:238075	40/94 (43%)
Npas2	XP_038939510.1	bHLH-PAS_NPAS2_PASD4	1..77	CDD:381580	31/94 (33%)
		PAS	84..234	CDD:395786	41/171 (24%)
		PAS_11	288..391	CDD:405306	43/103 (42%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3561
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.810