DRSC/TRiP Functional Genomics Resources

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Protein Alignment cyc and ahr2

DIOPT Version :10

Sequence 1:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_571339.1 Gene:ahr2 / 30517 ZFINID:ZDB-GENE-990714-16 Length:1027 Species:Danio rerio


Alignment Length:419 Identity:100/419 - (23%)
Similarity:176/419 - (42%) Gaps:103/419 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 KQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQHL----------RGIRGS 86
            |.|.|   ||.||::|:.:::|::::|....::.:||||:|||::|.:|          :...|:
Zfish    30 KSNPS---KRHRDRLNSELDKLTNLLPFSEDVRARLDKLSVLRLSVGYLKVKSFFNATIKKTGGN 91

  Fly    87 GSLH----PFNGSDYRPSFL-----SDQELKMIILQASEGFLFVVGCDRGRILYVSDSVSSVLNS 142
            |.|:    .|.|:....|.|     |:.||   :|||..||:.||..: |.:.|.|.::...|..
Zfish    92 GWLNDRSGTFGGNGQTASSLDGVNFSEGEL---LLQALNGFVLVVTAE-GYVFYSSPTIQDYLGF 152

  Fly   143 TQADLLGQSWFDVLHPKDIGKVKEQLS-SLEQCPRERLIDAKTMLPVKTDVPQSLCRLCPG---- 202
            .|:|::..|.|:::|..|....:.||. :|.  |.....|....:...:|:.:.:....|.    
Zfish   153 HQSDVVHHSVFELIHTDDRAMFRRQLHFALN--PSSDSADGSEAMQSSSDITRDMVNYNPQHIPP 215

  Fly   203 -----ARRSFFCRMKLRTASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVIQCTGYLKS---- 258
                 ..|||.||  .|...:|         ||...:...:.||...|....:...|.|..    
Zfish   216 ENSSFLERSFCCR--FRCLLDN---------SSGFLALNFQGRLKYLHGQNKLAEDGTLAHPQLA 269

  Fly   259 ----WTPIKDEDQDADSDEQTTNLSCLVAIGRIPPN---VRNSTVPASLDNHPNIRHVLFISRHS 316
                .||::                        ||:   :|:.|             :||.::|.
Zfish   270 LFIIATPLQ------------------------PPSILEIRSKT-------------LLFQTKHK 297

  Fly   317 GEGKFLFIDQRATLVIGFLPQEI-LGTSFYEYFHNEDIAALMESHKMVMQVPEKVTTQVYRFRCK 380
            .:...:.||.|..:|:|:...|: :..|.|::.|..|:....::|..:::..|...| |:|...|
Zfish   298 LDFTPMGIDTRGKVVLGYTEIELCMRGSGYQFIHAADMMYCADNHIRMIKTGESGLT-VFRLLSK 361

  Fly   381 DNSYIQLQSEWR-AFKNPWTSEIDYIIAK 408
            ..::|.:|:..| .:|   ....|:|||:
Zfish   362 GGTWIWVQANARLVYK---AGRPDFIIAR 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cycNP_524168.2 bHLH_SF 31..92 CDD:469605 22/73 (30%)
PAS 111..173 CDD:214512 20/62 (32%)
PAS_11 311..411 CDD:464214 26/100 (26%)
ahr2NP_571339.1 bHLH-PAS_AhR_like 27..85 CDD:381539 19/57 (33%)
PAS 120..183 CDD:214512 21/66 (32%)
PAS_3 312..386 CDD:430001 19/77 (25%)
Med15 <600..>832 CDD:312941
Blue background indicates that the domain is not in the aligned region.

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