DRSC/TRiP Functional Genomics Resources

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Protein Alignment cyc and hlh-34

DIOPT Version :9

Sequence 1:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_506391.2 Gene:hlh-34 / 179860 WormBaseID:WBGene00011327 Length:322 Species:Caenorhabditis elegans


Alignment Length:409 Identity:79/409 - (19%)
Similarity:155/409 - (37%) Gaps:136/409 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 SDENRKQNHSEIEKRRRDKMNTY-INELSSMIPMCFAMQ-RKLDKLTVLRMAVQH--LRGIRGSG 87
            |:|.:|.:.|:.::||  :|..| .::|::.:|:..|:. :.:||.|::|:|..:  |..|.|. 
 Worm     6 SEEKQKPSKSQAQQRR--QMENYEFSQLANELPLARAISGQHIDKTTMVRLATAYIKLHNIFGQ- 67

  Fly    88 SLHPFNGSDY---RPSFLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVSSVLNSTQADLLG 149
            |...::.:||   ..|..::..|.::     :|| ||:...||.:||:|:::|..|..:|.::.|
 Worm    68 SQRAYSSADYYYGSDSLWTNNHLDLL-----DGF-FVILDRRGDVLYISETISIYLGLSQVEMTG 126

  Fly   150 QSWFDVLHPKDIGKVKEQLSSLEQCPRERLIDAKTMLPVKTDVPQSLCRLCPGARRSFFCRMKLR 214
            .:..|.:|.:||......|:                                      :|.:...
 Worm   127 NAMVDYIHEQDINCFNSALN--------------------------------------YCDLNWP 153

  Fly   215 TASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVIQCTGYLKSWTPIKDEDQDADSDEQTTNLS 279
            ...|.::|     ||.::.:.|...|.:.|:|...::.|               ...:..|..::
 Worm   154 QMCNVRVK-----SSLTKRANKDAVRASPGYKVLRLEIT---------------MGPNTNTRMIA 198

  Fly   280 C------LVAIGRIPPNVRNSTVPASLDNHPNIRHVLFISRHSGEGKFLFIDQRATLVIG--FLP 336
            |      :::...||.|  :..:..|:|.|                 ..|.|::|..::.  |.|
 Worm   199 CYPMPTPVLSTVTIPSN--SFVIITSIDLH-----------------ITFADEKAHQLLNNPFYP 244

  Fly   337 -QEILGTSFYEYFHNEDIAALMESHKMVMQVPEKVTTQVYRFRCKDNSYIQLQSEWRAFKNPW-- 398
             ..|.|.|.|......|...:.:.|..:..:                         .|:|.|:  
 Worm   245 DSNIKGMSLYSLIDISDSEVISKMHFDIFNL-------------------------GAYKTPYYR 284

  Fly   399 -----TSEIDYIIAKNSVF 412
                 |||..|:  ::::|
 Worm   285 MILNQTSETFYV--ESNIF 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cycNP_524168.2 HLH 31..84 CDD:278439 15/56 (27%)
PAS 111..212 CDD:279347 19/100 (19%)
PAS 111..173 CDD:214512 18/61 (30%)
PAS_11 311..411 CDD:291273 18/109 (17%)
PAS 311..406 CDD:238075 18/104 (17%)
hlh-34NP_506391.2 HLH 6..67 CDD:238036 18/62 (29%)
PAS 93..>145 CDD:238075 17/57 (30%)
PAS 214..305 CDD:238075 23/134 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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