DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cyc and hlh-34

DIOPT Version :10

Sequence 1:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_506391.2 Gene:hlh-34 / 179860 WormBaseID:WBGene00011327 Length:322 Species:Caenorhabditis elegans


Alignment Length:409 Identity:79/409 - (19%)
Similarity:155/409 - (37%) Gaps:136/409 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 SDENRKQNHSEIEKRRRDKMNTY-INELSSMIPMCFAMQ-RKLDKLTVLRMAVQH--LRGIRGSG 87
            |:|.:|.:.|:.::||  :|..| .::|::.:|:..|:. :.:||.|::|:|..:  |..|.|. 
 Worm     6 SEEKQKPSKSQAQQRR--QMENYEFSQLANELPLARAISGQHIDKTTMVRLATAYIKLHNIFGQ- 67

  Fly    88 SLHPFNGSDY---RPSFLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVSSVLNSTQADLLG 149
            |...::.:||   ..|..::..|.::     :|| ||:...||.:||:|:::|..|..:|.::.|
 Worm    68 SQRAYSSADYYYGSDSLWTNNHLDLL-----DGF-FVILDRRGDVLYISETISIYLGLSQVEMTG 126

  Fly   150 QSWFDVLHPKDIGKVKEQLSSLEQCPRERLIDAKTMLPVKTDVPQSLCRLCPGARRSFFCRMKLR 214
            .:..|.:|.:||......|:                                      :|.:...
 Worm   127 NAMVDYIHEQDINCFNSALN--------------------------------------YCDLNWP 153

  Fly   215 TASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVIQCTGYLKSWTPIKDEDQDADSDEQTTNLS 279
            ...|.::|     ||.::.:.|...|.:.|:|...::.|               ...:..|..::
 Worm   154 QMCNVRVK-----SSLTKRANKDAVRASPGYKVLRLEIT---------------MGPNTNTRMIA 198

  Fly   280 C------LVAIGRIPPNVRNSTVPASLDNHPNIRHVLFISRHSGEGKFLFIDQRATLVIG--FLP 336
            |      :::...||.|  :..:..|:|.|                 ..|.|::|..::.  |.|
 Worm   199 CYPMPTPVLSTVTIPSN--SFVIITSIDLH-----------------ITFADEKAHQLLNNPFYP 244

  Fly   337 -QEILGTSFYEYFHNEDIAALMESHKMVMQVPEKVTTQVYRFRCKDNSYIQLQSEWRAFKNPW-- 398
             ..|.|.|.|......|...:.:.|..:..:                         .|:|.|:  
 Worm   245 DSNIKGMSLYSLIDISDSEVISKMHFDIFNL-------------------------GAYKTPYYR 284

  Fly   399 -----TSEIDYIIAKNSVF 412
                 |||..|:  ::::|
 Worm   285 MILNQTSETFYV--ESNIF 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cycNP_524168.2 bHLH_SF 31..92 CDD:469605 18/64 (28%)
PAS 111..173 CDD:214512 18/61 (30%)
PAS_11 311..411 CDD:464214 18/109 (17%)
hlh-34NP_506391.2 bHLH_PAS 10..65 CDD:381397 15/56 (27%)
PAS 93..>145 CDD:238075 17/57 (30%)
PAS 214..305 CDD:238075 23/134 (17%)

Return to query results.
Submit another query.