DRSC/TRiP Functional Genomics Resources

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Protein Alignment cyc and Ncoa3

DIOPT Version :10

Sequence 1:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster
Sequence 2:NP_032705.2 Gene:Ncoa3 / 17979 MGIID:1276535 Length:1403 Species:Mus musculus


Alignment Length:379 Identity:95/379 - (25%)
Similarity:162/379 - (42%) Gaps:73/379 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 EKRRRDKMNTYINELSSMIPMCFA----MQRKLDKLTVLRMAVQHLRGIRGSG-------SLHPF 92
            ||.||::.:.||.||:.:|....:    ...|.||..:|:..|:.:|.|:..|       .:...
Mouse    35 EKWRREQESKYIEELAELISANLSDIDNFNVKPDKCAILKETVRQIRQIKEQGKTISSDDDVQKA 99

  Fly    93 NGSDYRPSFLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVSSVLNSTQADLLGQSWFDVLH 157
            :.|......:....|..::|||.:||||||..| |.|::||::|:..|...|.||:..|.:.:||
Mouse   100 DVSSTGQGVIDKDSLGPLLLQALDGFLFVVNRD-GNIVFVSENVTQYLQYKQEDLVNTSVYSILH 163

  Fly   158 PKDIGKVKEQLSSLEQCPRERLIDAKTMLPVK-TDVPQSLCRLCPGARRSFFCRMKLRTASNNQI 221
            .:|      :...|:..|:      .|:..|. |:..|.      ....:|.|||.::|   :.|
Mouse   164 EQD------RKDFLKHLPK------STVNGVSWTNENQR------QKSHTFNCRMLMKT---HDI 207

  Fly   222 KEESDTSSSSRSSTKRKSRLTTGHKYRVIQCTGYLKSWTPIKDEDQDADSDEQTTNLSCLVAIGR 286
            .|:.:.|..:|            .:|..:||.. |.....:.:|.:|..        .|::.:.|
Mouse   208 LEDVNASPETR------------QRYETMQCFA-LSQPRAMLEEGEDLQ--------CCMICVAR 251

  Fly   287 IPPNVRNSTVPASLDNHPNIRHVLFISRHSGEGKFLFIDQ---RATLVIGFLPQEILGTSFYEYF 348
                    .|.|...:.|.    .||:||...||.:.||.   |:::..||  ::|:......:|
Mouse   252 --------RVTAPFPSSPE----SFITRHDLSGKVVNIDTNSLRSSMRPGF--EDIIRRCIQRFF 302

  Fly   349 H-NEDIAALMESHKMVMQVPEKVTTQVYRFRCKDNSYIQLQSEWRAFKNPWTSE 401
            . |:..:...:.|.....|.....|.||||...|.:.:..|::.:.|:||.|::
Mouse   303 SLNDGQSWSQKRHYQEAYVHGHAETPVYRFSLADGTIVSAQTKSKLFRNPVTND 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cycNP_524168.2 bHLH_SF 31..92 CDD:469605 17/63 (27%)
PAS 111..173 CDD:214512 24/61 (39%)
PAS_11 311..411 CDD:464214 27/95 (28%)
Ncoa3NP_032705.2 bHLH_SF 33..102 CDD:469605 17/66 (26%)
PAS 117..172 CDD:214512 23/61 (38%)
PAS_11 262..372 CDD:464214 27/101 (27%)
NCOA_u2 451..564 CDD:465223
SRC-1 608..696 CDD:462615
DUF4927 714..801 CDD:465083
Nuc_rec_co-act 1056..1102 CDD:462608
Med15 1094..>1395 CDD:312941
DUF1518 1270..1327 CDD:462174
Blue background indicates that the domain is not in the aligned region.

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