DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kap-alpha1 and AT1G32880

DIOPT Version :10

Sequence 1:NP_524167.1 Gene:Kap-alpha1 / 40160 FlyBaseID:FBgn0024889 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_174565.1 Gene:AT1G32880 / 840182 AraportID:AT1G32880 Length:183 Species:Arabidopsis thaliana


Alignment Length:101 Identity:25/101 - (24%)
Similarity:31/101 - (30%) Gaps:56/101 - (55%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 NILVGG--------------------PFSG--ASMNPARAFG-----PALVGWRWHDHWIY---- 227
            |:::||                    .|||  |.|:|..|.|     ||       |.|..    
plant   132 NVMIGGEIAKIVDLGCAKTVEENENLEFSGTPAFMSPEVARGEEQSFPA-------DVWALGCTV 189

  Fly   228 ---------WVGPFIGSALAALIY------EYMVIP 248
                     |  |.:...:|| ||      |..|||
plant   190 IEMATGSSPW--PELNDVVAA-IYKIGFTGESPVIP 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha1NP_524167.1 SRP1 1..543 CDD:227396 25/101 (25%)
armadillo repeat 133..165 CDD:293788
armadillo repeat 173..209 CDD:293788 8/36 (22%)
armadillo repeat 215..250 CDD:293788 13/53 (25%)
armadillo repeat 267..292 CDD:293788
armadillo repeat 300..336 CDD:293788
armadillo repeat 342..376 CDD:293788
armadillo repeat 384..421 CDD:293788
armadillo repeat 427..461 CDD:293788
AT1G32880NP_174565.1 SRP1 <40..181 CDD:227396 13/55 (24%)
armadillo repeat 41..78 CDD:293788
armadillo repeat 84..117 CDD:293788
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.