DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha1 and IMPA-8

DIOPT Version :9

Sequence 1:NP_524167.1 Gene:Kap-alpha1 / 40160 FlyBaseID:FBgn0024889 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_200013.1 Gene:IMPA-8 / 835275 AraportID:AT5G52000 Length:441 Species:Arabidopsis thaliana


Alignment Length:430 Identity:182/430 - (42%)
Similarity:259/430 - (60%) Gaps:17/430 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 INEEMIQMLFSGRENEQLEATQKFRKLLS-RDPNPPIEEVIQKGIVPQFVTFLRNSANATLQFEA 158
            :::::|..|:|.....|||:..|.|::.| ||    |..||:.|:||:.|..|:|.....||:|.
plant    10 VSDDIIDGLWSDDPPLQLESVTKIRRITSQRD----ISCVIRSGVVPRLVQLLKNQVFPKLQYEV 70

  Fly   159 AWTLTNIASGTSQQTKVVIEAGAVPIFIDLLSSPHDDVQEQAVWALGNIAGDSPMCRDHLLGSGI 223
            ||.|||||   .....||:...|||:.|.|::||.|.|:|||:|.|.|:||.|...||.:|.||:
plant    71 AWALTNIA---VDNPGVVVNNNAVPVLIQLIASPKDYVREQAIWTLSNVAGHSIHYRDFVLNSGV 132

  Fly   224 LEPLLHVLSNSDRITMIRNAVWTLSNLCRGKSPPADFAKISHGLPILARLLKYTDADVLSDTCWA 288
            |.|||.:|...   |.:|.|.|.|.||||||..|| |.::...||.|..||...|.|||.:.|.|
plant   133 LMPLLRLLYKD---TTLRIATWALRNLCRGKPHPA-FDQVKPALPALEILLHSHDEDVLKNACMA 193

  Fly   289 IGYLSDGPNDKIQAVIDAGVCRRLVELLLHPQQNVSTAALRAVGNIVTGDDQQTQVILGYNALTC 353
            :.:||:|..|.||:||:||...:||::|..|...|...||..:|.:..|:.||||.::...||..
plant   194 LCHLSEGSEDGIQSVIEAGFVPKLVQILQLPSPVVLVPALLTIGAMTAGNHQQTQCVINSGALPI 258

  Fly   354 ISHLLHSTAET-IKKESCWTISNIAAGNREQIQALINANIFPQLMVIMQTAEFKTRKEAAWAITN 417
            ||::|....|. |||.:||.||||.||.:||||::|:||:.|.|:.:.|..:|..:|||.|||:|
plant   259 ISNMLTRNHENKIKKCACWVISNITAGTKEQIQSVIDANLIPILVNLAQDTDFYMKKEAVWAISN 323

  Fly   418 ATSSGTHEQIHYLVQVGCVPPMCDFLTVVDS-DIVQVALNALENILKAG--EKFQTRPNPYAITI 479
            ...:|:|:||.|:.:..|:..:||.|...|. ..:...|:.|||:||||  ||.....|||.:.|
plant   324 MALNGSHDQIKYMAEQSCIKQLCDILVYSDERTTILKCLDGLENMLKAGEAEKNSEDVNPYCLLI 388

  Fly   480 EECGGLDKIEYLQAHENRDIYHKSFYI-IEQYFGNEEEDS 518
            |:..||:||..||.::|.|||.|::.| :..:|..::|::
plant   389 EDAEGLEKISKLQMNKNDDIYEKAYKILVTNWFEEDDENN 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha1NP_524167.1 SRP1 1..543 CDD:227396 182/430 (42%)
IBB 3..116 CDD:280005 6/20 (30%)
ARM 131..252 CDD:237987 55/120 (46%)
armadillo repeat 133..165 CDD:293788 15/31 (48%)
armadillo repeat 173..209 CDD:293788 17/35 (49%)
armadillo repeat 215..250 CDD:293788 15/34 (44%)
ARM 264..378 CDD:237987 49/114 (43%)
armadillo repeat 267..292 CDD:293788 11/24 (46%)
armadillo repeat 300..336 CDD:293788 14/35 (40%)
armadillo repeat 342..376 CDD:293788 15/34 (44%)
ARM 356..461 CDD:237987 44/106 (42%)
armadillo repeat 384..421 CDD:293788 16/36 (44%)
armadillo repeat 427..461 CDD:293788 10/34 (29%)
Arm_3 473..517 CDD:292804 18/44 (41%)
IMPA-8NP_200013.1 HEAT repeat 14..39 CDD:293787 8/24 (33%)
armadillo repeat 44..77 CDD:293788 15/32 (47%)
ARM 45..158 CDD:237987 55/118 (47%)
HEAT_2 51..156 CDD:290374 50/110 (45%)
armadillo repeat 85..118 CDD:293788 16/32 (50%)
armadillo repeat 124..156 CDD:293788 15/34 (44%)
ARM 171..284 CDD:237987 49/112 (44%)
armadillo repeat 172..197 CDD:293788 11/24 (46%)
armadillo repeat 205..241 CDD:293788 14/35 (40%)
armadillo repeat 247..282 CDD:293788 15/34 (44%)
ARM 250..368 CDD:237987 48/117 (41%)
armadillo repeat 290..324 CDD:293788 15/33 (45%)
armadillo repeat 333..368 CDD:293788 10/34 (29%)
Arm_3 382..>421 CDD:292804 17/38 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 54 1.000 Domainoid score I4139
eggNOG 1 0.900 - - E1_COG5064
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54553
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23316
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X492
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.890

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