DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kap-alpha1 and kpna2

DIOPT Version :9

Sequence 1:NP_524167.1 Gene:Kap-alpha1 / 40160 FlyBaseID:FBgn0024889 Length:543 Species:Drosophila melanogaster
Sequence 2:XP_012821932.1 Gene:kpna2 / 493517 XenbaseID:XB-GENE-979796 Length:528 Species:Xenopus tropicalis


Alignment Length:531 Identity:242/531 - (45%)
Similarity:326/531 - (61%) Gaps:31/531 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 EMRRRREEVGIQLRKNKREQQLFKRRNVVLEPATSSTSAGVESNTDNEQQAADMHMADSSTGGQN 82
            ||||||.||.::|||.|::.|:.|||||...| ...||...|.|.:.:                 
 Frog    24 EMRRRRIEVNVELRKAKKDDQMLKRRNVSTFP-DEPTSPLQEKNQNGQ----------------- 70

  Fly    83 EEAAGSGAQPSVINEEMIQMLFSGRENEQLEATQKFRKLLSRDPNPPIEEVIQKGIVPQFVTFLR 147
                 :..|.||  ||:::.:.|.....||:|||..||||||:..|||:.:||.|::|:.|.||.
 Frog    71 -----TSTQWSV--EEIVRGVASSSLEIQLQATQAARKLLSREREPPIDRIIQAGLIPKLVAFLA 128

  Fly   148 NSANATLQFEAAWTLTNIASGTSQQTKVVIEAGAVPIFIDLLSSPHDDVQEQAVWALGNIAGDSP 212
            .:..:.:||||||.|||||||||.|||.|:|.|.||.||.||:|||..:.|||||||||||||..
 Frog   129 RTDCSPIQFEAAWALTNIASGTSDQTKAVVEGGGVPAFISLLASPHPHISEQAVWALGNIAGDGS 193

  Fly   213 MCRDHLLGSGILEPLLHVLSNSDRITM----IRNAVWTLSNLCRGKSPPADFAKISHGLPILARL 273
            ..||.::..|.:.|||.:|::.|..|:    :||..||||||||.|:|......|...||.|.||
 Frog   194 AYRDLVIKHGAVGPLLALLADPDLSTLATGYLRNVTWTLSNLCRNKNPAPPLDAIQQILPTLVRL 258

  Fly   274 LKYTDADVLSDTCWAIGYLSDGPNDKIQAVIDAGVCRRLVELLLHPQQNVSTAALRAVGNIVTGD 338
            |.:.|.:||:|||||:.||:||.||:|..|:..|:..|:|:||...:..:.|..||.|||||||.
 Frog   259 LHHDDREVLADTCWAVSYLTDGSNDRINVVVGTGLVPRIVQLLGCGELTIVTPCLRTVGNIVTGT 323

  Fly   339 DQQTQVILGYNALTCISHLLHSTAETIKKESCWTISNIAAGNREQIQALINANIFPQLMVIMQTA 403
            |:||||:|...||:..:.||......|:||:.||:|||.||.::|||.::|..:.|.|:.|::.|
 Frog   324 DEQTQVVLDAGALSVFAELLTHHKNNIQKEAAWTLSNITAGRQDQIQEVVNHGLIPYLIEILRKA 388

  Fly   404 EFKTRKEAAWAITNATSSGTHEQIHYLVQVGCVPPMCDFLTVVDSDIVQVALNALENILKAGEKF 468
            ::||:|||.||:||.||.||.:||.||||...:.|:.:.|:|.||..|.|.|:|..|:..|.||.
 Frog   389 DYKTQKEAIWAVTNYTSGGTIDQIIYLVQCSVIEPLSNLLSVKDSKTVLVILDAFTNVFAAAEKL 453

  Fly   469 QTRPNPYAITIEECGGLDKIEYLQAHENRDIYHKSFYIIEQYFGNEE-EDSRVAPVAGTQQFEFD 532
             .......:.:|||||||:||.||:|||..:|..|..:||:||..|: ||..:||...:..:.|.
 Frog   454 -GETEKLCLMVEECGGLDRIEALQSHENEQVYKASAGLIEKYFSAEDGEDESLAPETTSDGYTFQ 517

  Fly   533 PDNMPSTGFNF 543
            .:....|.|||
 Frog   518 VEGGTHTTFNF 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha1NP_524167.1 SRP1 1..543 CDD:227396 240/529 (45%)
IBB 3..116 CDD:280005 32/97 (33%)
ARM 131..252 CDD:237987 67/124 (54%)
armadillo repeat 133..165 CDD:293788 15/31 (48%)
armadillo repeat 173..209 CDD:293788 24/35 (69%)
armadillo repeat 215..250 CDD:293788 15/38 (39%)
ARM 264..378 CDD:237987 55/113 (49%)
armadillo repeat 267..292 CDD:293788 14/24 (58%)
armadillo repeat 300..336 CDD:293788 14/35 (40%)
armadillo repeat 342..376 CDD:293788 14/33 (42%)
ARM 356..461 CDD:237987 48/104 (46%)
armadillo repeat 384..421 CDD:293788 17/36 (47%)
armadillo repeat 427..461 CDD:293788 14/33 (42%)
Arm_3 473..517 CDD:292804 21/44 (48%)
kpna2XP_012821932.1 SRP1 20..516 CDD:227396 237/517 (46%)
armadillo repeat 114..146 CDD:293788 15/31 (48%)
armadillo repeat 154..190 CDD:293788 24/35 (69%)
armadillo repeat 196..235 CDD:293788 15/38 (39%)
armadillo repeat 252..277 CDD:293788 14/24 (58%)
armadillo repeat 285..321 CDD:293788 14/35 (40%)
armadillo repeat 327..361 CDD:293788 14/33 (42%)
armadillo repeat 369..403 CDD:293788 15/33 (45%)
armadillo repeat 412..446 CDD:293788 14/33 (42%)
armadillo repeat 459..494 CDD:293788 18/34 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.