DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kap-alpha1 and kpna1

DIOPT Version :9

Sequence 1:NP_524167.1 Gene:Kap-alpha1 / 40160 FlyBaseID:FBgn0024889 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_989192.1 Gene:kpna1 / 394800 XenbaseID:XB-GENE-1014184 Length:538 Species:Xenopus tropicalis


Alignment Length:554 Identity:338/554 - (61%)
Similarity:402/554 - (72%) Gaps:31/554 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSASHKQR-----YKNAALDSTEMRRRREEVGIQLRKNKREQQLFKRRNVV-LEPATSSTSAGVE 59
            |::|.|:.     |||.:|::.||||||||.|:||||.|||:||||||||. .|.||.  ..|:.
 Frog     1 MTSSGKENSRLKSYKNKSLNTDEMRRRREEEGLQLRKQKREEQLFKRRNVACAEEATE--EEGMS 63

  Fly    60 SNTDNEQQAADMHMADSSTGGQNEEAAGSGAQPSVINEEMIQMLFSGRENEQLEATQKFRKLLSR 124
            ....:|.|..:|.||.|                .||..:||:|:||....:||.||||||||||:
 Frog    64 DGNFHEAQINNMEMASS----------------GVITGDMIEMIFSNNPEQQLAATQKFRKLLSK 112

  Fly   125 DPNPPIEEVI-QKGIVPQFVTFLRNSANATLQFEAAWTLTNIASGTSQQTKVVIEAGAVPIFIDL 188
            :|||||:||| ..|:|.:||.||:...|.||||||||.|||||||.|.||::||:||||||||:|
 Frog   113 EPNPPIDEVIGTPGVVARFVEFLKRKENCTLQFEAAWVLTNIASGNSVQTRIVIQAGAVPIFIEL 177

  Fly   189 LSSPHDDVQEQAVWALGNIAGDSPMCRDHLLGSGILEPLLHVLSNSDRITMIRNAVWTLSNLCRG 253
            |||..:|||||||||||||||||.:|||::|...||.|||.:||..:|:||.|||||.|||||||
 Frog   178 LSSEFEDVQEQAVWALGNIAGDSTVCRDYVLDCNILPPLLQLLSKQNRLTMTRNAVWALSNLCRG 242

  Fly   254 KSPPADFAKISHGLPILARLLKYTDADVLSDTCWAIGYLSDGPNDKIQAVIDAGVCRRLVELLLH 318
            |:||.:|||:|..|.:|:.||...|.|||:|.|||:.||||||||||||||||||||||||||:|
 Frog   243 KNPPPEFAKVSPCLTVLSWLLFVNDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH 307

  Fly   319 PQQNVSTAALRAVGNIVTGDDQQTQVILGYNALTCISHLLHSTAETIKKESCWTISNIAAGNREQ 383
            ....|.:.|||||||||||||.||||||..:||..:.|||.|..|:||||:|||||||.||||.|
 Frog   308 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRVQ 372

  Fly   384 IQALINANIFPQLMVIMQTAEFKTRKEAAWAITNATSSGTHEQIHYLVQVGCVPPMCDFLTVVDS 448
            ||.:|.|||||.|:.|:|||||:||||||||||||||.|:.|||.|||.:||:.|:||.||.:||
 Frog   373 IQTVIEANIFPALINILQTAEFRTRKEAAWAITNATSGGSAEQIRYLVDLGCIKPLCDLLTCMDS 437

  Fly   449 DIVQVALNALENILKAGEKFQTRP----NPYAITIEECGGLDKIEYLQAHENRDIYHKSFYIIEQ 509
            .|||||||.|||||:.||:...|.    |||...|||..||||||:||:|||::||.|:|.:||.
 Frog   438 KIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 502

  Fly   510 YFGNEEEDSRVAPVA--GTQQFEFDPDNMPSTGF 541
            |||.|:|||.:||..  ..|||.|.....|..||
 Frog   503 YFGTEDEDSSIAPQVDLSQQQFIFQQREAPMEGF 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha1NP_524167.1 SRP1 1..543 CDD:227396 338/554 (61%)
IBB 3..116 CDD:280005 50/118 (42%)
ARM 131..252 CDD:237987 82/121 (68%)
armadillo repeat 133..165 CDD:293788 19/32 (59%)
armadillo repeat 173..209 CDD:293788 28/35 (80%)
armadillo repeat 215..250 CDD:293788 20/34 (59%)
ARM 264..378 CDD:237987 78/113 (69%)
armadillo repeat 267..292 CDD:293788 12/24 (50%)
armadillo repeat 300..336 CDD:293788 27/35 (77%)
armadillo repeat 342..376 CDD:293788 21/33 (64%)
ARM 356..461 CDD:237987 75/104 (72%)
armadillo repeat 384..421 CDD:293788 28/36 (78%)
armadillo repeat 427..461 CDD:293788 22/33 (67%)
Arm_3 473..517 CDD:292804 27/43 (63%)
kpna1NP_989192.1 SRP1 1..516 CDD:227396 330/532 (62%)
HEAT repeat 88..116 CDD:293787 17/27 (63%)
armadillo repeat 128..154 CDD:293788 16/25 (64%)
armadillo repeat 162..198 CDD:293788 28/35 (80%)
armadillo repeat 204..239 CDD:293788 20/34 (59%)
armadillo repeat 256..281 CDD:293788 12/24 (50%)
armadillo repeat 289..325 CDD:293788 27/35 (77%)
armadillo repeat 331..365 CDD:293788 21/33 (64%)
armadillo repeat 373..409 CDD:293788 27/35 (77%)
armadillo repeat 416..450 CDD:293788 22/33 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 79 1.000 Domainoid score I8558
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 631 1.000 Inparanoid score I831
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 1 1.000 - - otm47698
Panther 1 1.100 - - LDO PTHR23316
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2158
SonicParanoid 1 1.000 - - X492
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.190

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