DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kap-alpha1 and cut15

DIOPT Version :9

Sequence 1:NP_524167.1 Gene:Kap-alpha1 / 40160 FlyBaseID:FBgn0024889 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_587868.1 Gene:cut15 / 2539426 PomBaseID:SPCC962.03c Length:542 Species:Schizosaccharomyces pombe


Alignment Length:560 Identity:270/560 - (48%)
Similarity:367/560 - (65%) Gaps:45/560 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSAS-------HKQRYK-NAALDSTEMRRRREEVGIQLRKNKREQQLFKRRNV--VLEPATSSTS 55
            ||||       .:|.|| .....:.|:|||||...|::||.|||:.|.||||:  |.|||..:..
pombe     1 MSASSRFIPEHRRQNYKGKGTFQADELRRRRETQQIEIRKQKREENLNKRRNLVDVQEPAEETIP 65

  Fly    56 AGVESNTDNEQQAADMHMADSSTGGQNEEAAGSGAQPSVINEEMIQMLFSGRENEQLEATQKFRK 120
              :|.:.:|:.: .::.:.|                       :::.|:|.....|::||.||||
pombe    66 --LEQDKENDLE-LELQLPD-----------------------LLKALYSDDIEAQIQATAKFRK 104

  Fly   121 LLSRDPNPPIEEVIQKGIVPQFVTFLRNSANATLQFEAAWTLTNIASGTSQQTKVVIEAGAVPIF 185
            .||::.||||::||..|:||:||.||.:. |..|:|||:|.|||:|||:|.||.||:||.|||:|
pombe   105 ALSKETNPPIQKVIDAGVVPRFVEFLSHE-NNLLKFEASWALTNVASGSSNQTHVVVEANAVPVF 168

  Fly   186 IDLLSSPHDDVQEQAVWALGNIAGDSPMCRDHLLGSGILEPLLHVLSNSDRITMIRNAVWTLSNL 250
            :.||||...||:||||||||||||||||||||:|..|:|||||:::.::.|::|:||:.|||||:
pombe   169 VSLLSSSEQDVREQAVWALGNIAGDSPMCRDHVLQCGVLEPLLNIIESNRRLSMLRNSTWTLSNM 233

  Fly   251 CRGKSPPADFAKISHGLPILARLLKYTDADVLSDTCWAIGYLSDGPNDKIQAVIDAGVCRRLVEL 315
            ||||:|..|:..||..:|:|::|:...|.|||.|..|||.|||||.|:||||:||||:.||||||
pombe   234 CRGKNPQPDWNSISQVIPVLSKLIYTLDEDVLVDALWAISYLSDGANEKIQAIIDAGIPRRLVEL 298

  Fly   316 LLHPQQNVSTAALRAVGNIVTGDDQQTQVILGYNALTCISHLLHSTAETIKKESCWTISNIAAGN 380
            |:||...|.|.|||:|||||||||.|||||:...||:.:..||.|..:.::||:|||||||.|||
pombe   299 LMHPSAQVQTPALRSVGNIVTGDDVQTQVIINCGALSALLSLLSSPRDGVRKEACWTISNITAGN 363

  Fly   381 REQIQALINANIFPQLMVIMQTAEFKTRKEAAWAITNATSSGTH--EQIHYLVQVGCVPPMCDFL 443
            ..|||.:|.|||.|.|:.::.||:||.:|||.|||:||||.|..  :||.|||:.|.:.|:|:.|
pombe   364 SSQIQYVIEANIIPPLIHLLTTADFKIQKEACWAISNATSGGARRPDQIRYLVEQGAIKPLCNLL 428

  Fly   444 TVVDSDIVQVALNALENILKAGEKFQTRPNP-----YAITIEECGGLDKIEYLQAHENRDIYHKS 503
            ...|:.|:||||:.:||||:.|| .....||     ||:.:|:.||:|.|...|...|.:||.|:
pombe   429 ACQDNKIIQVALDGIENILRVGE-LDRANNPDKINLYAVYVEDAGGMDLIHECQNSSNSEIYQKA 492

  Fly   504 FYIIEQYFGNEEEDSRVAPVAGTQQFEFDPDNMPSTGFNF 543
            :.|||::||.|:|...:.|......|.|.....|:..|.|
pombe   493 YNIIEKFFGEEDEIEELEPETVGDTFTFGTTQEPAGDFQF 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha1NP_524167.1 SRP1 1..543 CDD:227396 269/558 (48%)
IBB 3..116 CDD:280005 33/122 (27%)
ARM 131..252 CDD:237987 74/120 (62%)
armadillo repeat 133..165 CDD:293788 17/31 (55%)
armadillo repeat 173..209 CDD:293788 25/35 (71%)
armadillo repeat 215..250 CDD:293788 18/34 (53%)
ARM 264..378 CDD:237987 68/113 (60%)
armadillo repeat 267..292 CDD:293788 11/24 (46%)
armadillo repeat 300..336 CDD:293788 25/35 (71%)
armadillo repeat 342..376 CDD:293788 16/33 (48%)
ARM 356..461 CDD:237987 55/106 (52%)
armadillo repeat 384..421 CDD:293788 21/36 (58%)
armadillo repeat 427..461 CDD:293788 15/33 (45%)
Arm_3 473..517 CDD:292804 20/48 (42%)
cut15NP_587868.1 SRP1 3..531 CDD:227396 266/555 (48%)
IBB 8..99 CDD:280005 30/116 (26%)
armadillo repeat 73..106 CDD:293788 10/56 (18%)
ARM 115..235 CDD:237987 74/120 (62%)
armadillo repeat 116..148 CDD:293788 17/32 (53%)
armadillo repeat 156..192 CDD:293788 25/35 (71%)
armadillo repeat 198..233 CDD:293788 18/34 (53%)
ARM 199..319 CDD:237987 69/119 (58%)
armadillo repeat 250..275 CDD:293788 11/24 (46%)
armadillo repeat 283..361 CDD:293788 49/77 (64%)
ARM 344..446 CDD:237987 52/101 (51%)
armadillo repeat 367..400 CDD:293788 18/32 (56%)
armadillo repeat 412..446 CDD:293788 15/33 (45%)
Arm_3 462..>501 CDD:292804 15/38 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 52 1.000 Domainoid score I3295
eggNOG 1 0.900 - - E1_COG5064
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 501 1.000 Inparanoid score I242
OMA 1 1.010 - - QHG54553
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 1 1.000 - - otm47040
orthoMCL 1 0.900 - - OOG6_100442
Panther 1 1.100 - - LDO PTHR23316
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2158
SonicParanoid 1 1.000 - - X492
TreeFam 1 0.960 - -
1312.860

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