DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha1 and ima-2

DIOPT Version :9

Sequence 1:NP_524167.1 Gene:Kap-alpha1 / 40160 FlyBaseID:FBgn0024889 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_491824.1 Gene:ima-2 / 172329 WormBaseID:WBGene00002073 Length:531 Species:Caenorhabditis elegans


Alignment Length:536 Identity:180/536 - (33%)
Similarity:290/536 - (54%) Gaps:54/536 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 QRYKNAALDSTEMRRRREEVGIQLRKNKREQQLFKRRNVVLEPATSSTSAGVESNTDNEQQAADM 71
            |:|||.. ...|:||||.|..:::||.|....:.||||:|      ....|..|.::.|:.....
 Worm    23 QQYKNLT-KHEELRRRRTECSVEIRKQKGADMMMKRRNIV------DVDEGGNSESELEEPEKIS 80

  Fly    72 HMADSSTGGQNEEAAGSGAQPSVINEEMIQMLFSGR--ENEQLEATQKFRKLLSRDPNPPIEEVI 134
            |. .|||...|:|               |:.:.|..  |::.:...:..||.||:..||||:|||
 Worm    81 HQ-QSSTRLSNDE---------------IRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVI 129

  Fly   135 QKGIVPQFVTFLRNSANATLQFEAAWTLTNIASGTSQQTKVVIEAGAVPIFIDLLSSPHDDVQEQ 199
            ..|::...|..| :..|..:|:||||.||||.||:::||...:|||.....|.|.......:.||
 Worm   130 HCGLLQALVQAL-SVENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQ 193

  Fly   200 AVWALGNIAGDSPMCRDHLLGSGILEPLLHVLSNSDRI--TMIRNAVWTLSNLCRGKSP--PADF 260
            |:||:.||||||...||:::....:|.|:|::...|::  :.:|...|..||:||.|:|  |.:.
 Worm   194 ALWAVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLGDSHVRTIAWAFSNMCRHKNPHAPLEV 258

  Fly   261 AKI-SHGLPILARLLKYTDADVLSDTCWAIGYLSDGPNDKIQAVIDAGVCRRLVELLLHPQQNVS 324
            .:: |.|   |.:|:::||..|..|.|||:.||:|||:::|:...::||...:| ......:|:.
 Worm   259 LRVLSKG---LVKLVQHTDRQVRQDACWAVSYLTDGPDEQIELARESGVLPHVV-AFFKEAENLV 319

  Fly   325 TAALRAVGNIVTGDDQQTQVILGYNALTCISHLLHST-AETIKKESCWTISNIAAGNREQIQALI 388
            ..|||.:||:.||:|..||.::...:|..|..|:..| :.:|.||.||.:|||.||.::||||::
 Worm   320 APALRTLGNVATGNDSLTQAVIDLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVL 384

  Fly   389 NANIFPQLMVIMQTAEFKTRKEAAWAITNATSSGTHEQIHYLVQVGCVPPMCDFLTVVDSDIVQV 453
            :||:.|.|:.::::.:.|.:.||:||::|....||:.|:..:::...||.:|..|...::|::..
 Worm   385 DANLLPVLINVLKSGDHKCQFEASWALSNLAQGGTNRQVVAMLEDNVVPALCQALLQTNTDMLNN 449

  Fly   454 ALNALENILKAGEKFQTRPN--PYAITI-----EECGGLDKIEYLQAHENRDIYHKSFYIIEQYF 511
            .|..|..::      .|..|  |:.:.|     ||.||||.:|.||..::..||.:::.||.|:|
 Worm   450 TLETLYTLM------LTVQNGYPHKVDILHDQVEENGGLDSLERLQESQSEQIYTQAYRIITQFF 508

  Fly   512 -----GNEEEDSRVAP 522
                 |.:|......|
 Worm   509 TDDDAGEKESHENADP 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha1NP_524167.1 SRP1 1..543 CDD:227396 180/536 (34%)
IBB 3..116 CDD:280005 30/110 (27%)
ARM 131..252 CDD:237987 46/122 (38%)
armadillo repeat 133..165 CDD:293788 13/31 (42%)
armadillo repeat 173..209 CDD:293788 13/35 (37%)
armadillo repeat 215..250 CDD:293788 9/36 (25%)
ARM 264..378 CDD:237987 43/114 (38%)
armadillo repeat 267..292 CDD:293788 9/24 (38%)
armadillo repeat 300..336 CDD:293788 10/35 (29%)
armadillo repeat 342..376 CDD:293788 12/34 (35%)
ARM 356..461 CDD:237987 36/105 (34%)
armadillo repeat 384..421 CDD:293788 13/36 (36%)
armadillo repeat 427..461 CDD:293788 7/33 (21%)
Arm_3 473..517 CDD:292804 20/55 (36%)
ima-2NP_491824.1 SRP1 21..522 CDD:227396 179/532 (34%)
IBB 21..103 CDD:280005 29/102 (28%)
ARM 126..248 CDD:237987 46/122 (38%)
armadillo repeat 128..159 CDD:293788 13/31 (42%)
armadillo repeat 167..203 CDD:293788 13/35 (37%)
armadillo repeat 209..246 CDD:293788 9/36 (25%)
ARM 266..374 CDD:237987 41/108 (38%)
armadillo repeat 296..331 CDD:293788 10/35 (29%)
armadillo repeat 337..372 CDD:293788 12/34 (35%)
ARM 338..454 CDD:237987 38/115 (33%)
armadillo repeat 380..416 CDD:293788 13/35 (37%)
armadillo repeat 423..454 CDD:293788 6/30 (20%)
Arm_3 470..517 CDD:292804 17/46 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 50 1.000 Domainoid score I7824
eggNOG 1 0.900 - - E1_COG5064
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54553
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100442
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.730

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