DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha1 and Kpna6

DIOPT Version :9

Sequence 1:NP_524167.1 Gene:Kap-alpha1 / 40160 FlyBaseID:FBgn0024889 Length:543 Species:Drosophila melanogaster
Sequence 2:XP_006502877.1 Gene:Kpna6 / 16650 MGIID:1100836 Length:541 Species:Mus musculus


Alignment Length:544 Identity:341/544 - (62%)
Similarity:407/544 - (74%) Gaps:37/544 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YKNAALDSTEMRRRREEVGIQLRKNKREQQLFKRRNVVLEPATSSTSAGVESNTDNEQQAA-DMH 72
            |||.||:..||||||||.||||||.||||||||||||.|               .||:.|. |..
Mouse    22 YKNNALNPEEMRRRREEEGIQLRKQKREQQLFKRRNVEL---------------INEEAAMFDSL 71

  Fly    73 MAD---SSTGGQNEEAAGSGAQPSVINEEMIQMLFSGRENEQLEATQKFRKLLSRDPNPPIEEVI 134
            :.|   |||.|:           |||..||::||||...:.||..|||||||||::|:|||:|||
Mouse    72 LMDSYVSSTTGE-----------SVITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVI 125

  Fly   135 Q-KGIVPQFVTFLRNSANATLQFEAAWTLTNIASGTSQQTKVVIEAGAVPIFIDLLSSPHDDVQE 198
            . .|:|.:||.||:.:.|.||||||||.|||||||||||||:|||||||||||:||:|..:||||
Mouse   126 NTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQE 190

  Fly   199 QAVWALGNIAGDSPMCRDHLLGSGILEPLLHVLSNSDRITMIRNAVWTLSNLCRGKSPPADFAKI 263
            |||||||||||||.:|||::|...||.|||.:|:.|.|:||.|||||.||||||||:||.:|||:
Mouse   191 QAVWALGNIAGDSSLCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKV 255

  Fly   264 SHGLPILARLLKYTDADVLSDTCWAIGYLSDGPNDKIQAVIDAGVCRRLVELLLHPQQNVSTAAL 328
            |..||:|:|||..:|:|:|:|.|||:.|||||||:|||||||:||||||||||:|....|::.||
Mouse   256 SPCLPVLSRLLFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPAL 320

  Fly   329 RAVGNIVTGDDQQTQVILGYNALTCISHLLHSTAETIKKESCWTISNIAAGNREQIQALINANIF 393
            |||||||||||.||||||..:||.|:.|||.|:.|:|:||:|||||||.||||.||||:|:||||
Mouse   321 RAVGNIVTGDDIQTQVILNCSALPCLLHLLSSSKESIRKEACWTISNITAGNRAQIQAVIDANIF 385

  Fly   394 PQLMVIMQTAEFKTRKEAAWAITNATSSGTHEQIHYLVQVGCVPPMCDFLTVVDSDIVQVALNAL 458
            |.|:.|:|.|||:||||||||||||||.||.|||.|||.:||:.|:||.|||:||.|||||||.|
Mouse   386 PVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGL 450

  Fly   459 ENILKAGEKFQTRP----NPYAITIEECGGLDKIEYLQAHENRDIYHKSFYIIEQYFGNEEEDSR 519
            ||||:.||:...|.    |||...|||..||||||:||:|||::||.|:|.:||.|||.|::||.
Mouse   451 ENILRLGEQESKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSS 515

  Fly   520 VAPVAG--TQQFEFDPDNMPSTGF 541
            :||...  .|||.|.....|..||
Mouse   516 LAPQVDETQQQFIFQQPEAPMEGF 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha1NP_524167.1 SRP1 1..543 CDD:227396 341/544 (63%)
IBB 3..116 CDD:280005 52/110 (47%)
ARM 131..252 CDD:237987 85/121 (70%)
armadillo repeat 133..165 CDD:293788 19/32 (59%)
armadillo repeat 173..209 CDD:293788 29/35 (83%)
armadillo repeat 215..250 CDD:293788 20/34 (59%)
ARM 264..378 CDD:237987 77/113 (68%)
armadillo repeat 267..292 CDD:293788 13/24 (54%)
armadillo repeat 300..336 CDD:293788 26/35 (74%)
armadillo repeat 342..376 CDD:293788 21/33 (64%)
ARM 356..461 CDD:237987 76/104 (73%)
armadillo repeat 384..421 CDD:293788 28/36 (78%)
armadillo repeat 427..461 CDD:293788 23/33 (70%)
Arm_3 473..517 CDD:292804 27/43 (63%)
Kpna6XP_006502877.1 SRP1 41..530 CDD:227396 323/514 (63%)
armadillo repeat 131..157 CDD:293788 16/25 (64%)
armadillo repeat 165..201 CDD:293788 29/35 (83%)
armadillo repeat 207..242 CDD:293788 20/34 (59%)
armadillo repeat 259..284 CDD:293788 13/24 (54%)
armadillo repeat 292..328 CDD:293788 26/35 (74%)
armadillo repeat 334..368 CDD:293788 21/33 (64%)
armadillo repeat 376..412 CDD:293788 27/35 (77%)
armadillo repeat 419..453 CDD:293788 23/33 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834126
Domainoid 1 1.000 74 1.000 Domainoid score I9104
eggNOG 1 0.900 - - E1_COG5064
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H22472
Inparanoid 1 1.050 637 1.000 Inparanoid score I829
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54553
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 1 1.000 - - otm42585
orthoMCL 1 0.900 - - OOG6_100442
Panther 1 1.100 - - O PTHR23316
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2158
SonicParanoid 1 1.000 - - X492
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.800

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