DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir76a and gria1a

DIOPT Version :9

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_991161.1 Gene:gria1a / 798689 ZFINID:ZDB-GENE-020125-1 Length:914 Species:Danio rerio


Alignment Length:408 Identity:85/408 - (20%)
Similarity:142/408 - (34%) Gaps:101/408 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 GLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNR----LISWTLLLRPFQF 359
            |:||.::..:.|..|..:.:.....|.:|.:......|::.::..|.:    :.|:   |.|..:
Zfish   474 GMVGELVYGKADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPTKSKPGVFSF---LDPLAY 535

  Fly   360 VLWMCVMLCLLLESLALGITRR-----W----------------EHSSVAAG--------NSWIS 395
            .:|||::...:..|:.|.:..|     |                ..||...|        .|...
Zfish   536 EIWMCIVFAYIGVSVVLFLVSRFSPYEWHADDCEDGAEENPNQPSSSSAQPGQNQQNQNQQSQEQ 600

  Fly   396 SLRFGCIS----TLKLFVNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEA 456
            :..||..:    :|..|:.|..:....|.:.|.|....:...:|:.:.|:..|||.||:..:...
Zfish   601 TNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSP 665

  Fly   457 ADSRQRLFDHKLIWTGTSQAWIT---------TIDE------RSADPVLLGLMEHYRVYDANLIS 506
            .:|.:.|.....|..||..|..|         .:.|      :||||                 |
Zfish   666 IESAEDLAKQTEIAYGTLDAGSTKEFFRRSKIAVFEKMWSYMKSADP-----------------S 713

  Fly   507 AFSHTEQMGFVVERLQFGH----LGNT--ELIEN----DALKRLKLMVDDIYFAFTVAFVPRLWP 561
            .|..|...|.:..|...|.    |.:|  |.||.    |.:|....:....|...|    |:..|
Zfish   714 VFVKTTDEGVMRVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIAT----PKGSP 774

  Fly   562 HLNAYNDFILAWHSSG-FDKF---WEWKIAAEYMNAHRQNRIVASEKTNLDIGPVKLGIDNFIGL 622
            ..|..|..:|..:..| .||.   | |....|..:....::    :||:      .|.:.|..|:
Zfish   775 LRNPVNLAVLKLNEQGLLDKLKNKW-WYDKGECGSGGGDSK----DKTS------ALSLSNVAGV 828

  Fly   623 ILLWCFGMICSLLTFLGE 640
            ..:...|:..::|..|.|
Zfish   829 FYILIGGLGLAMLVALVE 846

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
gria1aNP_991161.1 Periplasmic_Binding_Protein_Type_1 26..387 CDD:299141
ANF_receptor 36..369 CDD:279440
PBP2_iGluR_AMPA_GluR1 404..806 CDD:270447 75/356 (21%)
Lig_chan 536..836 CDD:278489 69/331 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591484
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.