DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and grin3ba

DIOPT Version :9

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:XP_021323058.1 Gene:grin3ba / 566411 ZFINID:ZDB-GENE-070912-354 Length:1118 Species:Danio rerio


Alignment Length:621 Identity:122/621 - (19%)
Similarity:207/621 - (33%) Gaps:206/621 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 DQPN--ILVITSQYLNSSTFEIKTNRFVGP----RNFNKNPEPVEFYI--LQRFDAKGTKATWET 210
            |:||  .|..:.|||.............||    |:|::......|:|  ||| |..| :.:|.|
Zfish   348 DKPNKHELPSSGQYLARFLSNTSFTGLTGPVRVERSFSRVLTSQRFHIWSLQR-DPLG-QPSWVT 410

  Fly   211 QSAMSSKMRNLKGREVVIGIFDYK--------------------------------PFML---LD 240
            .::..|....|:.:.:..|:..::                                ||:.   :|
Zfish   411 VASWQSGRLELEEQGLWPGVTQHQREDGPGIRLGGRWQAGLPVAGSRLRVVTLVEHPFVFTREVD 475

  Fly   241 YE----KPPLYYDRFMNTTDVTIDGTDIQLMLIFCELYNCTIQVDTSEPYD-----WG------- 289
            .|    ...|..|...|.::|        |..:|.||....   .:|.|.|     :|       
Zfish   476 EEGQCPAGQLCLDPQTNNSEV--------LNQLFRELEQTN---SSSLPTDMRKCCYGYCIDLLE 529

  Fly   290 ----------DIYLNASG----------YGLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGR 334
                      |:|:...|          .||||.:|....|..|....:.......:|.|.....
Zfish   530 KLAEDMHFEFDLYIVGDGKYGAWKGGRWSGLVGDLLSGVADMAVTSFSINSARSRVIDFTSPFFS 594

  Fly   335 SGVTCLV-----PAPNRLISWTLLLRPFQFVLWMCVMLCLLLESLAL---------GIT------ 379
            :.:..||     .||.....|     |..:.:|:.:.:.|.:.:|.:         |:|      
Zfish   595 TSLGILVRSKDTAAPIGAFMW-----PLHWSMWVGIFVALHITALFITLYEWNSPFGMTPHGRNR 654

  Fly   380 -RRWEHSSVAAGNSWISSLRFGCISTLKLFVNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGG 443
             |.:.:||..   :...::.||.....|.....:..::.:.:|:..:||.|         .|:..
Zfish   655 IRVFSYSSAL---NLCYAILFGRTVASKTPKCWTGRFLMNLWAIFCLLVLS---------SYTAN 707

  Fly   444 LAAILT-LPTLEEAADSRQRLFDHKLIWTGTSQAWITTIDERSADPVLL----GLMEHYRVY--- 500
            |||::. ..|.||.:.    :.|.||........: .|:.|.||:..:.    .:.|:.|.:   
Zfish   708 LAAVMVGEKTFEEVSG----IHDVKLHHPSLGFRF-GTVRESSAEDYVKKSFPEMHEYMRRFNKP 767

  Fly   501 -----------DANLISAFSHTEQMGFVVERLQFGHLGNTELIENDALKRLKLMVDDIYFAFTVA 554
                       |...:.||                       |.:.||...::.:|......||.
Zfish   768 TTPDGVSTLKTDPPQLDAF-----------------------IMDKALLDYEVSIDADCKLLTVG 809

  Fly   555 ----------FVPRLWPHLNAYNDFILAWHSSGF-----DKFWEWKIAAEYMNAHRQNRIVASEK 604
                      .:|:..|.....::::..:.|.|:     ||   |     |.......|:.|..:
Zfish   810 KPFAIEGYGIGLPQNSPLTRNVSEYVSRYKSDGYMDMLHDK---W-----YKVVPCGKRVFAVTE 866

  Fly   605 TNLDIGPVKLGIDNFIGLILLWCFGMICSLLTFLGE 640
            |      :::||.:|.||.:|.|.|:..:|||.|||
Zfish   867 T------LQMGIQHFSGLFVLLCVGVAGALLTLLGE 896

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
grin3baXP_021323058.1 Periplasmic_Binding_Protein_Type_1 26..428 CDD:324556 22/81 (27%)
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 81/458 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591697
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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