DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and grik4

DIOPT Version :10

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:XP_021322088.1 Gene:grik4 / 556582 ZFINID:ZDB-GENE-070821-5 Length:965 Species:Danio rerio


Alignment Length:680 Identity:124/680 - (18%)
Similarity:222/680 - (32%) Gaps:213/680 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 YDYKIKEDEFEGKGIPYNDWTLRL-TVAIERSHCETFIAFQEQIPEFARYFYHASIYSIWRSLRN 129
            |.|.:...||.         .||| .:|.:|.:...|..|....|.|..:.  .|:...|:...:
Zfish   241 YTYILTSLEFS---------LLRLDDLADQRVNIVGFSVFNRTHPFFQDFV--LSLNRSWQENCD 294

  Fly   130 RFMFVYTKEFEDKKDSYLSGYIFQDQPNILVITSQYLN--------------SSTFEIKTN---- 176
            ...|..|.         ||..:..|..:.:|...|.||              |..:|..|:    
Zfish   295 HAPFAGTP---------LSSALLFDAVHTVVAAVQELNRSQNVGATQLSCKSSKIWEHGTSLMNY 350

  Fly   177 -RFVGPRNFNKNPEPVEFYILQRFDAKGTKATWETQSAMSSK--MRNLKGREVVIGIFDYKPFML 238
             |.|.......:.|         |::||.::.:..:...:|:  :|.       ||.:..:..:.
Zfish   351 LRMVELEGLTGHIE---------FNSKGQRSNYALRIMQNSRDGLRQ-------IGQWHSEQGLS 399

  Fly   239 LDYEKPPLYYDRFMNTTDVTIDGTDIQLMLIFCELYNCTIQVDT--SEPY----------DWGDI 291
            ::.:.|.|      |.||.               |:|.|:.:.|  ..||          :..|.
Zfish   400 MERKLPSL------NVTDT---------------LFNTTLTITTILENPYVMLRANHQELEGNDR 443

  Fly   292 Y---------------------------------LNASGYGLVGMILDRRNDYGVGGMYLWYEAY 323
            |                                 .|.:..|:||.::.|:.|..|..:.:..|..
Zfish   444 YEGFCVDMLKELADILKFKYRIRLVGDGVYGVPGANGTWTGMVGELISRKADLAVAALTITAERE 508

  Fly   324 EYMDMTHFLGRSGVTCLVPAP-NRLISWTLLLRPFQFVLWMCVMLCLLLESLALGITRR-----W 382
            :.:|.:......|::.:.... .|...:...|.||...:|:.::|..|..|..|.:..|     |
Zfish   509 KVIDFSKPFMTLGISIMYRVHIGRRPGYFSFLDPFSPGVWLFMLLAYLAVSCVLFLVARLTPYEW 573

  Fly   383 EH-------------SSVAAGNS-WISSLRFGCISTLKLFVNQSTNYVTSSYALRTVLVASYMID 433
            .:             :..:.||| |.         .:..|:.|.:.....:.:.|.|....:...
Zfish   574 YNPHPCLKGRCSLLINQYSLGNSFWF---------PVGGFMQQGSTIAPRALSTRCVSGVWWAFT 629

  Fly   434 IILTTVYSGGLAAILTLPTLEEAADSRQRLFDHKLIWTGTSQAWIT-TIDERSADPVLLGLMEHY 497
            :|:.:.|:..|||.||:..:|...:|...|.|...|..||.....| |..:.|          .|
Zfish   630 LIIISSYTANLAAFLTVQRMEVPIESVDDLADQTAIEYGTMHGGSTMTFFQNS----------RY 684

  Fly   498 RVYDA--NLI-----SAFSHTEQMGFV-VERLQFGHLGNTELIE-----NDALKRLKLMVDDIYF 549
            :.|..  |.:     |.|..:.:.|.. |....:.:|..:.:.|     |..|.::..::|...:
Zfish   685 QTYQRMWNFMYSKQPSVFVKSTEEGIARVLNSNYAYLLESTMNEYYRQRNCNLTQIGGLLDTKGY 749

  Fly   550 AFTVAFVPRLWPHLNAYNDFILAWHSSGFDKFWEWKIAAEYMNAHRQNRIVASEKTNLDIGPVK- 613
            ...:       |..:.|.|              |:.:|  .:....:||:...::...|.|... 
Zfish   750 GIGM-------PLGSVYRD--------------EFDLA--ILRLQEENRLEILKRKWWDGGKCPK 791

  Fly   614 --------LGIDNFIGLILLWCFGMICSLL 635
                    ||::|..|:.::    ::|.||
Zfish   792 EEDHRAKGLGMENIGGIFVV----LVCGLL 817

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
grik4XP_021322088.1 Periplasmic_Binding_Protein_type1 24..401 CDD:471960 37/195 (19%)
PBP2_iGluR_kainate_KA1 425..785 CDD:270442 69/401 (17%)

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